Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3127 and Atu3128 are separated by 153 nucleotides Atu3128 and Atu3129 are separated by 8 nucleotides
Atu3127: Atu3127 - acetyltransferase, at 133,736 to 134,833
Atu3127
Atu3128: Atu3128 - di-trans,poly-cis-decaprenylcistransferase, at 134,987 to 136,084
Atu3128
Atu3129: Atu3129 - polygalacturonase-like protein, at 136,093 to 137,646
Atu3129
Position (kb) 134
135
136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 134.004 kb on + strand, within Atu3127 at 134.026 kb on + strand, within Atu3127 at 134.052 kb on - strand, within Atu3127 at 134.052 kb on - strand, within Atu3127 at 134.092 kb on + strand, within Atu3127 at 134.103 kb on + strand, within Atu3127 at 134.116 kb on - strand, within Atu3127 at 134.139 kb on + strand, within Atu3127 at 134.237 kb on + strand, within Atu3127 at 134.422 kb on + strand, within Atu3127 at 134.442 kb on + strand, within Atu3127 at 134.544 kb on - strand, within Atu3127 at 134.604 kb on + strand, within Atu3127 at 134.732 kb on - strand at 134.778 kb on + strand at 134.785 kb on + strand at 134.786 kb on - strand at 134.811 kb on - strand at 134.821 kb on - strand at 134.906 kb on - strand at 135.006 kb on - strand at 135.061 kb on - strand at 135.169 kb on - strand, within Atu3128 at 135.216 kb on + strand, within Atu3128 at 135.217 kb on - strand, within Atu3128 at 135.253 kb on + strand, within Atu3128 at 135.275 kb on - strand, within Atu3128 at 135.389 kb on + strand, within Atu3128 at 135.427 kb on + strand, within Atu3128 at 135.434 kb on + strand, within Atu3128 at 135.541 kb on + strand, within Atu3128 at 135.637 kb on + strand, within Atu3128 at 135.645 kb on - strand, within Atu3128 at 135.702 kb on + strand, within Atu3128 at 135.707 kb on + strand, within Atu3128 at 135.710 kb on - strand, within Atu3128 at 135.715 kb on - strand, within Atu3128 at 135.883 kb on + strand, within Atu3128 at 135.891 kb on - strand, within Atu3128 at 135.988 kb on - strand at 135.990 kb on - strand at 136.009 kb on + strand at 136.127 kb on + strand at 136.132 kb on - strand at 136.167 kb on + strand at 136.243 kb on - strand at 136.320 kb on - strand, within Atu3129 at 136.350 kb on + strand, within Atu3129 at 136.416 kb on - strand, within Atu3129 at 136.467 kb on + strand, within Atu3129 at 136.671 kb on + strand, within Atu3129 at 136.679 kb on - strand, within Atu3129 at 136.755 kb on - strand, within Atu3129 at 136.825 kb on - strand, within Atu3129 at 136.869 kb on - strand, within Atu3129 at 136.970 kb on - strand, within Atu3129 at 137.045 kb on - strand, within Atu3129
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 134,004 + Atu3127 0.24 +0.4 134,026 + Atu3127 0.26 -0.4 134,052 - Atu3127 0.29 +0.2 134,052 - Atu3127 0.29 -0.1 134,092 + Atu3127 0.32 +2.4 134,103 + Atu3127 0.33 +0.5 134,116 - Atu3127 0.35 +0.0 134,139 + Atu3127 0.37 +0.9 134,237 + Atu3127 0.46 -2.2 134,422 + Atu3127 0.62 -0.5 134,442 + Atu3127 0.64 +0.1 134,544 - Atu3127 0.74 +0.9 134,604 + Atu3127 0.79 +0.3 134,732 - -0.1 134,778 + +0.2 134,785 + +1.1 134,786 - -1.0 134,811 - -1.5 134,821 - +0.1 134,906 - +0.5 135,006 - +0.6 135,061 - +2.5 135,169 - Atu3128 0.17 -0.2 135,216 + Atu3128 0.21 -1.1 135,217 - Atu3128 0.21 -3.1 135,253 + Atu3128 0.24 +0.2 135,275 - Atu3128 0.26 +0.8 135,389 + Atu3128 0.37 -1.6 135,427 + Atu3128 0.40 +1.7 135,434 + Atu3128 0.41 +0.4 135,541 + Atu3128 0.50 -2.2 135,637 + Atu3128 0.59 +2.3 135,645 - Atu3128 0.60 +1.6 135,702 + Atu3128 0.65 +0.5 135,707 + Atu3128 0.66 +0.0 135,710 - Atu3128 0.66 +0.1 135,715 - Atu3128 0.66 +0.5 135,883 + Atu3128 0.82 -1.0 135,891 - Atu3128 0.82 +0.5 135,988 - +0.4 135,990 - +0.0 136,009 + +0.0 136,127 + +0.2 136,132 - +0.8 136,167 + +1.2 136,243 - +1.5 136,320 - Atu3129 0.15 +1.7 136,350 + Atu3129 0.17 +1.7 136,416 - Atu3129 0.21 -1.0 136,467 + Atu3129 0.24 +1.0 136,671 + Atu3129 0.37 -0.3 136,679 - Atu3129 0.38 +1.1 136,755 - Atu3129 0.43 -0.2 136,825 - Atu3129 0.47 +0.2 136,869 - Atu3129 0.50 -0.0 136,970 - Atu3129 0.56 -1.6 137,045 - Atu3129 0.61 -0.5
Or see this region's nucleotide sequence