Experiment: Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0619 and Atu0620 overlap by 4 nucleotides Atu0620 and Atu0621 are separated by 0 nucleotides Atu0621 and Atu0622 are separated by 227 nucleotides
Atu0619: Atu0619 - exopolyphosphatase, at 607,141 to 608,841
Atu0619
Atu0620: Atu0620 - cell division protein, at 608,838 to 609,578
Atu0620
Atu0621: Atu0621 - MFS permease, at 609,579 to 610,976
Atu0621
Atu0622: Atu0622 - metallo-beta-lactamase superfamily protein, at 611,204 to 612,187
Atu0622
Position (kb) 609
610
611 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 609.523 kb on - strand at 609.625 kb on + strand at 609.625 kb on + strand at 609.625 kb on + strand at 609.690 kb on + strand at 609.716 kb on + strand at 609.782 kb on + strand, within Atu0621 at 609.790 kb on - strand, within Atu0621 at 609.811 kb on - strand, within Atu0621 at 609.840 kb on - strand, within Atu0621 at 609.994 kb on + strand, within Atu0621 at 609.999 kb on + strand, within Atu0621 at 610.002 kb on - strand, within Atu0621 at 610.007 kb on - strand, within Atu0621 at 610.094 kb on - strand, within Atu0621 at 610.130 kb on + strand, within Atu0621 at 610.249 kb on - strand, within Atu0621 at 610.351 kb on - strand, within Atu0621 at 610.417 kb on + strand, within Atu0621 at 610.556 kb on - strand, within Atu0621 at 610.565 kb on + strand, within Atu0621 at 610.599 kb on - strand, within Atu0621 at 610.599 kb on - strand, within Atu0621 at 610.628 kb on - strand, within Atu0621 at 610.663 kb on + strand, within Atu0621 at 610.663 kb on + strand, within Atu0621 at 610.671 kb on - strand, within Atu0621 at 610.683 kb on + strand, within Atu0621 at 610.701 kb on - strand, within Atu0621 at 610.720 kb on + strand, within Atu0621 at 610.739 kb on + strand, within Atu0621 at 610.836 kb on - strand, within Atu0621 at 610.983 kb on + strand at 611.122 kb on + strand at 611.122 kb on + strand at 611.132 kb on - strand at 611.216 kb on + strand at 611.245 kb on + strand at 611.260 kb on + strand at 611.304 kb on + strand, within Atu0622 at 611.482 kb on + strand, within Atu0622 at 611.482 kb on + strand, within Atu0622 at 611.515 kb on + strand, within Atu0622 at 611.515 kb on + strand, within Atu0622 at 611.645 kb on + strand, within Atu0622 at 611.660 kb on - strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.756 kb on + strand, within Atu0622 at 611.764 kb on - strand, within Atu0622 at 611.764 kb on - strand, within Atu0622 at 611.764 kb on - strand, within Atu0622 at 611.789 kb on + strand, within Atu0622 at 611.809 kb on - strand, within Atu0622 at 611.820 kb on - strand, within Atu0622 at 611.888 kb on + strand, within Atu0622 at 611.971 kb on + strand, within Atu0622
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct remove 609,523 - +0.6 609,625 + -0.2 609,625 + +4.3 609,625 + -1.7 609,690 + +0.9 609,716 + +2.2 609,782 + Atu0621 0.15 -0.1 609,790 - Atu0621 0.15 -0.1 609,811 - Atu0621 0.17 -2.9 609,840 - Atu0621 0.19 +0.2 609,994 + Atu0621 0.30 -0.6 609,999 + Atu0621 0.30 +1.1 610,002 - Atu0621 0.30 +0.6 610,007 - Atu0621 0.31 -2.0 610,094 - Atu0621 0.37 -0.3 610,130 + Atu0621 0.39 +0.1 610,249 - Atu0621 0.48 -0.2 610,351 - Atu0621 0.55 -0.5 610,417 + Atu0621 0.60 -1.0 610,556 - Atu0621 0.70 +0.6 610,565 + Atu0621 0.71 -1.6 610,599 - Atu0621 0.73 -0.7 610,599 - Atu0621 0.73 -1.5 610,628 - Atu0621 0.75 -0.1 610,663 + Atu0621 0.78 -0.2 610,663 + Atu0621 0.78 -0.4 610,671 - Atu0621 0.78 -0.2 610,683 + Atu0621 0.79 +0.8 610,701 - Atu0621 0.80 -1.2 610,720 + Atu0621 0.82 +0.6 610,739 + Atu0621 0.83 -0.6 610,836 - Atu0621 0.90 -2.6 610,983 + -0.6 611,122 + -1.4 611,122 + -0.1 611,132 - -1.0 611,216 + -1.2 611,245 + +0.3 611,260 + +2.7 611,304 + Atu0622 0.10 -0.7 611,482 + Atu0622 0.28 +1.2 611,482 + Atu0622 0.28 -0.2 611,515 + Atu0622 0.32 +1.4 611,515 + Atu0622 0.32 +1.2 611,645 + Atu0622 0.45 -0.2 611,660 - Atu0622 0.46 -0.1 611,756 + Atu0622 0.56 -0.0 611,756 + Atu0622 0.56 -2.3 611,756 + Atu0622 0.56 -0.2 611,756 + Atu0622 0.56 -1.4 611,756 + Atu0622 0.56 -0.6 611,764 - Atu0622 0.57 -1.3 611,764 - Atu0622 0.57 +0.4 611,764 - Atu0622 0.57 -0.9 611,789 + Atu0622 0.59 -1.4 611,809 - Atu0622 0.61 -2.0 611,820 - Atu0622 0.63 +0.5 611,888 + Atu0622 0.70 +0.2 611,971 + Atu0622 0.78 -0.7
Or see this region's nucleotide sequence