Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3900 and Atu3901 are separated by 214 nucleotides Atu3901 and Atu3902 are separated by 5 nucleotides
Atu3900: Atu3900 - nitrate reductase large subunit, at 996,252 to 998,900
Atu3900
Atu3901: Atu3901 - nitrite reductase small subunit, at 999,115 to 999,450
Atu3901
Atu3902: Atu3902 - nitrite reductase large subunit, at 999,456 to 1,001,903
Atu3902
Position (kb) 999
1000 Strain fitness (log2 ratio) -2
-1
0
1
2 at 998.143 kb on + strand, within Atu3900 at 998.201 kb on + strand, within Atu3900 at 998.201 kb on + strand, within Atu3900 at 998.209 kb on - strand, within Atu3900 at 998.209 kb on - strand, within Atu3900 at 998.329 kb on + strand, within Atu3900 at 998.337 kb on - strand, within Atu3900 at 998.350 kb on + strand, within Atu3900 at 998.449 kb on - strand, within Atu3900 at 998.489 kb on - strand, within Atu3900 at 998.521 kb on - strand, within Atu3900 at 998.762 kb on - strand at 998.902 kb on + strand at 998.932 kb on + strand at 998.957 kb on + strand at 999.054 kb on + strand at 999.081 kb on + strand at 999.081 kb on + strand at 999.089 kb on - strand at 999.209 kb on - strand, within Atu3901 at 999.209 kb on - strand, within Atu3901 at 999.278 kb on + strand, within Atu3901 at 999.350 kb on + strand, within Atu3901 at 999.350 kb on + strand, within Atu3901 at 999.350 kb on + strand, within Atu3901 at 999.350 kb on + strand, within Atu3901 at 999.363 kb on - strand, within Atu3901 at 999.494 kb on + strand at 999.501 kb on - strand at 999.501 kb on - strand at 999.501 kb on - strand at 999.538 kb on + strand at 999.594 kb on - strand at 999.626 kb on + strand at 999.688 kb on + strand at 999.696 kb on - strand at 999.696 kb on - strand at 999.696 kb on - strand at 999.736 kb on + strand, within Atu3902 at 999.744 kb on - strand, within Atu3902 at 999.744 kb on - strand, within Atu3902 at 999.744 kb on - strand, within Atu3902 at 999.755 kb on - strand, within Atu3902 at 999.815 kb on - strand, within Atu3902 at 999.849 kb on - strand, within Atu3902 at 999.892 kb on - strand, within Atu3902 at 999.899 kb on + strand, within Atu3902 at 999.946 kb on + strand, within Atu3902 at 999.998 kb on - strand, within Atu3902 at 1000.000 kb on + strand, within Atu3902 at 1000.009 kb on + strand, within Atu3902 at 1000.010 kb on - strand, within Atu3902 at 1000.015 kb on + strand, within Atu3902 at 1000.015 kb on + strand, within Atu3902 at 1000.015 kb on + strand, within Atu3902 at 1000.023 kb on - strand, within Atu3902 at 1000.023 kb on - strand, within Atu3902 at 1000.023 kb on - strand, within Atu3902 at 1000.050 kb on - strand, within Atu3902 at 1000.135 kb on + strand, within Atu3902
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 998,143 + Atu3900 0.71 -0.6 998,201 + Atu3900 0.74 +0.3 998,201 + Atu3900 0.74 -0.9 998,209 - Atu3900 0.74 +1.7 998,209 - Atu3900 0.74 +0.5 998,329 + Atu3900 0.78 -0.3 998,337 - Atu3900 0.79 +0.5 998,350 + Atu3900 0.79 +0.2 998,449 - Atu3900 0.83 -0.0 998,489 - Atu3900 0.84 -0.0 998,521 - Atu3900 0.86 -0.5 998,762 - +0.4 998,902 + +0.5 998,932 + +0.5 998,957 + +0.2 999,054 + -0.2 999,081 + -0.1 999,081 + +1.5 999,089 - +1.2 999,209 - Atu3901 0.28 -0.5 999,209 - Atu3901 0.28 -2.1 999,278 + Atu3901 0.49 -0.4 999,350 + Atu3901 0.70 +0.2 999,350 + Atu3901 0.70 -0.1 999,350 + Atu3901 0.70 -0.8 999,350 + Atu3901 0.70 -1.0 999,363 - Atu3901 0.74 +0.4 999,494 + +0.1 999,501 - +0.9 999,501 - +1.4 999,501 - -1.6 999,538 + -0.7 999,594 - -0.2 999,626 + +0.5 999,688 + +1.9 999,696 - +0.7 999,696 - +0.9 999,696 - +0.2 999,736 + Atu3902 0.11 +0.7 999,744 - Atu3902 0.12 +0.6 999,744 - Atu3902 0.12 -0.5 999,744 - Atu3902 0.12 +0.5 999,755 - Atu3902 0.12 -0.1 999,815 - Atu3902 0.15 +0.6 999,849 - Atu3902 0.16 +1.5 999,892 - Atu3902 0.18 -2.5 999,899 + Atu3902 0.18 +0.9 999,946 + Atu3902 0.20 +0.5 999,998 - Atu3902 0.22 -0.2 1,000,000 + Atu3902 0.22 -1.5 1,000,009 + Atu3902 0.23 +0.4 1,000,010 - Atu3902 0.23 -0.4 1,000,015 + Atu3902 0.23 -0.4 1,000,015 + Atu3902 0.23 +1.0 1,000,015 + Atu3902 0.23 +0.0 1,000,023 - Atu3902 0.23 -1.3 1,000,023 - Atu3902 0.23 +0.2 1,000,023 - Atu3902 0.23 -0.9 1,000,050 - Atu3902 0.24 -0.9 1,000,135 + Atu3902 0.28 -0.1
Or see this region's nucleotide sequence