Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3618 and Atu3619 are separated by 111 nucleotides Atu3619 and Atu3620 are separated by 3 nucleotides Atu3620 and Atu3621 overlap by 11 nucleotides
Atu3618: Atu3618 - hypothetical protein, at 672,427 to 673,065
Atu3618
Atu3619: Atu3619 - hypothetical protein, at 673,177 to 673,512
Atu3619
Atu3620: Atu3620 - hypothetical protein, at 673,516 to 674,541
Atu3620
Atu3621: Atu3621 - cobyrinic acid synthase, at 674,531 to 676,435
Atu3621
Position (kb) 673
674
675 Strain fitness (log2 ratio) -2
-1
0
1
2 at 672.547 kb on + strand, within Atu3618 at 672.547 kb on + strand, within Atu3618 at 672.555 kb on - strand, within Atu3618 at 672.562 kb on + strand, within Atu3618 at 672.724 kb on - strand, within Atu3618 at 672.761 kb on - strand, within Atu3618 at 672.761 kb on - strand, within Atu3618 at 672.822 kb on + strand, within Atu3618 at 672.834 kb on + strand, within Atu3618 at 672.842 kb on + strand, within Atu3618 at 672.866 kb on + strand, within Atu3618 at 672.960 kb on + strand, within Atu3618 at 672.979 kb on - strand, within Atu3618 at 672.981 kb on - strand, within Atu3618 at 673.013 kb on - strand at 673.028 kb on + strand at 673.036 kb on - strand at 673.097 kb on + strand at 673.159 kb on + strand at 673.159 kb on - strand at 673.255 kb on - strand, within Atu3619 at 673.382 kb on + strand, within Atu3619 at 673.397 kb on + strand, within Atu3619 at 673.405 kb on - strand, within Atu3619 at 673.525 kb on - strand at 673.734 kb on + strand, within Atu3620 at 673.734 kb on + strand, within Atu3620 at 673.742 kb on - strand, within Atu3620 at 674.007 kb on - strand, within Atu3620 at 674.087 kb on - strand, within Atu3620 at 674.225 kb on + strand, within Atu3620 at 674.265 kb on - strand, within Atu3620 at 674.420 kb on - strand, within Atu3620 at 674.582 kb on - strand at 674.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 672,547 + Atu3618 0.19 +0.7 672,547 + Atu3618 0.19 +1.7 672,555 - Atu3618 0.20 +1.6 672,562 + Atu3618 0.21 +0.7 672,724 - Atu3618 0.46 -0.8 672,761 - Atu3618 0.52 -1.1 672,761 - Atu3618 0.52 +0.2 672,822 + Atu3618 0.62 -0.1 672,834 + Atu3618 0.64 +0.0 672,842 + Atu3618 0.65 -2.3 672,866 + Atu3618 0.69 +0.7 672,960 + Atu3618 0.83 -0.3 672,979 - Atu3618 0.86 -0.1 672,981 - Atu3618 0.87 -1.4 673,013 - -0.6 673,028 + +1.2 673,036 - -0.8 673,097 + +0.0 673,159 + -0.2 673,159 - +0.4 673,255 - Atu3619 0.23 -1.3 673,382 + Atu3619 0.61 +1.9 673,397 + Atu3619 0.65 -0.7 673,405 - Atu3619 0.68 -0.2 673,525 - +1.1 673,734 + Atu3620 0.21 -0.3 673,734 + Atu3620 0.21 -0.4 673,742 - Atu3620 0.22 +0.9 674,007 - Atu3620 0.48 +1.8 674,087 - Atu3620 0.56 -0.4 674,225 + Atu3620 0.69 -1.7 674,265 - Atu3620 0.73 +1.5 674,420 - Atu3620 0.88 -0.1 674,582 - +0.9 674,588 - -1.3
Or see this region's nucleotide sequence