Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3533 and Atu3534 are separated by 139 nucleotides Atu3534 and Atu3535 are separated by 10 nucleotides Atu3535 and Atu3536 are separated by 4 nucleotides
Atu3533: Atu3533 - sugar ABC transporter substrate-binding protein, at 582,466 to 583,506
Atu3533
Atu3534: Atu3534 - ABC transporter permease, at 583,646 to 584,686
Atu3534
Atu3535: Atu3535 - ABC transporter permease, at 584,697 to 585,674
Atu3535
Atu3536: Atu3536 - ABC transporter permease, at 585,679 to 587,220
Atu3536
Position (kb) 583
584
585 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 582.730 kb on + strand, within Atu3533 at 582.730 kb on + strand, within Atu3533 at 582.777 kb on + strand, within Atu3533 at 582.777 kb on + strand, within Atu3533 at 582.777 kb on + strand, within Atu3533 at 582.785 kb on - strand, within Atu3533 at 582.833 kb on + strand, within Atu3533 at 582.920 kb on - strand, within Atu3533 at 582.980 kb on - strand, within Atu3533 at 582.992 kb on - strand, within Atu3533 at 583.036 kb on + strand, within Atu3533 at 583.061 kb on + strand, within Atu3533 at 583.083 kb on - strand, within Atu3533 at 583.147 kb on - strand, within Atu3533 at 583.226 kb on - strand, within Atu3533 at 583.280 kb on - strand, within Atu3533 at 583.290 kb on + strand, within Atu3533 at 583.290 kb on + strand, within Atu3533 at 583.298 kb on - strand, within Atu3533 at 583.346 kb on + strand, within Atu3533 at 583.431 kb on - strand at 583.457 kb on + strand at 583.497 kb on - strand at 583.549 kb on + strand at 583.704 kb on + strand at 583.825 kb on + strand, within Atu3534 at 583.833 kb on - strand, within Atu3534 at 583.842 kb on - strand, within Atu3534 at 583.855 kb on - strand, within Atu3534 at 583.937 kb on + strand, within Atu3534 at 583.983 kb on - strand, within Atu3534 at 584.018 kb on + strand, within Atu3534 at 584.057 kb on + strand, within Atu3534 at 584.057 kb on + strand, within Atu3534 at 584.057 kb on + strand, within Atu3534 at 584.065 kb on - strand, within Atu3534 at 584.065 kb on - strand, within Atu3534 at 584.065 kb on - strand, within Atu3534 at 584.189 kb on + strand, within Atu3534 at 584.261 kb on + strand, within Atu3534 at 584.261 kb on + strand, within Atu3534 at 584.261 kb on + strand, within Atu3534 at 584.284 kb on - strand, within Atu3534 at 584.384 kb on + strand, within Atu3534 at 584.441 kb on + strand, within Atu3534 at 584.530 kb on + strand, within Atu3534 at 584.548 kb on - strand, within Atu3534 at 584.613 kb on + strand at 584.690 kb on - strand at 584.695 kb on - strand at 584.723 kb on - strand at 584.769 kb on - strand at 584.825 kb on + strand, within Atu3535 at 584.960 kb on + strand, within Atu3535 at 584.968 kb on - strand, within Atu3535 at 584.968 kb on - strand, within Atu3535 at 584.969 kb on - strand, within Atu3535 at 585.095 kb on - strand, within Atu3535 at 585.192 kb on + strand, within Atu3535 at 585.210 kb on - strand, within Atu3535 at 585.226 kb on + strand, within Atu3535 at 585.324 kb on - strand, within Atu3535 at 585.405 kb on - strand, within Atu3535 at 585.449 kb on - strand, within Atu3535 at 585.480 kb on - strand, within Atu3535 at 585.523 kb on + strand, within Atu3535 at 585.560 kb on + strand, within Atu3535
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 582,730 + Atu3533 0.25 +1.3 582,730 + Atu3533 0.25 -0.7 582,777 + Atu3533 0.30 -0.8 582,777 + Atu3533 0.30 +1.5 582,777 + Atu3533 0.30 +0.5 582,785 - Atu3533 0.31 -0.2 582,833 + Atu3533 0.35 -0.6 582,920 - Atu3533 0.44 -2.0 582,980 - Atu3533 0.49 -1.7 582,992 - Atu3533 0.51 -0.1 583,036 + Atu3533 0.55 -1.4 583,061 + Atu3533 0.57 -0.8 583,083 - Atu3533 0.59 +0.2 583,147 - Atu3533 0.65 +0.1 583,226 - Atu3533 0.73 +0.3 583,280 - Atu3533 0.78 -0.6 583,290 + Atu3533 0.79 +0.1 583,290 + Atu3533 0.79 +0.3 583,298 - Atu3533 0.80 -0.2 583,346 + Atu3533 0.85 -2.6 583,431 - +1.3 583,457 + +1.1 583,497 - +0.8 583,549 + -0.5 583,704 + +0.4 583,825 + Atu3534 0.17 +0.6 583,833 - Atu3534 0.18 +0.3 583,842 - Atu3534 0.19 -2.9 583,855 - Atu3534 0.20 +0.7 583,937 + Atu3534 0.28 +0.4 583,983 - Atu3534 0.32 -0.6 584,018 + Atu3534 0.36 +0.2 584,057 + Atu3534 0.39 -1.4 584,057 + Atu3534 0.39 +1.5 584,057 + Atu3534 0.39 -0.8 584,065 - Atu3534 0.40 +0.2 584,065 - Atu3534 0.40 -1.1 584,065 - Atu3534 0.40 +0.5 584,189 + Atu3534 0.52 +1.2 584,261 + Atu3534 0.59 -1.8 584,261 + Atu3534 0.59 +0.3 584,261 + Atu3534 0.59 +0.8 584,284 - Atu3534 0.61 -0.9 584,384 + Atu3534 0.71 -0.4 584,441 + Atu3534 0.76 -1.2 584,530 + Atu3534 0.85 +2.2 584,548 - Atu3534 0.87 -1.7 584,613 + -0.0 584,690 - +1.9 584,695 - +0.3 584,723 - +0.0 584,769 - -2.8 584,825 + Atu3535 0.13 +0.0 584,960 + Atu3535 0.27 +0.0 584,968 - Atu3535 0.28 +0.9 584,968 - Atu3535 0.28 -0.2 584,969 - Atu3535 0.28 -3.4 585,095 - Atu3535 0.41 -0.5 585,192 + Atu3535 0.51 -1.2 585,210 - Atu3535 0.52 -0.6 585,226 + Atu3535 0.54 -1.0 585,324 - Atu3535 0.64 -0.3 585,405 - Atu3535 0.72 -0.1 585,449 - Atu3535 0.77 -0.3 585,480 - Atu3535 0.80 -0.4 585,523 + Atu3535 0.84 +1.6 585,560 + Atu3535 0.88 +0.1
Or see this region's nucleotide sequence