Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3421 and Atu3423 are separated by 302 nucleotides Atu3423 and Atu3424 are separated by 27 nucleotides Atu3424 and Atu3425 are separated by 51 nucleotides Atu3425 and Atu3426 are separated by 154 nucleotides
Atu3421: Atu3421 - hypothetical protein, at 469,324 to 470,325
Atu3421
Atu3423: Atu3423 - hypothetical protein, at 470,628 to 471,077
Atu3423
Atu3424: Atu3424 - hypothetical protein, at 471,105 to 472,049
Atu3424
Atu3425: Atu3425 - hypothetical protein, at 472,101 to 472,646
Atu3425
Atu3426: Atu3426 - sulfonate monooxygenase, at 472,801 to 473,970
Atu3426
Position (kb) 471
472
473 Strain fitness (log2 ratio) -1
0
1
2
3 at 470.109 kb on - strand, within Atu3421 at 470.126 kb on + strand, within Atu3421 at 470.303 kb on - strand at 470.448 kb on + strand at 470.448 kb on + strand at 470.612 kb on + strand at 470.965 kb on - strand, within Atu3423 at 471.013 kb on - strand, within Atu3423 at 471.038 kb on + strand at 471.051 kb on - strand at 471.056 kb on - strand at 471.177 kb on - strand at 471.254 kb on - strand, within Atu3424 at 471.254 kb on - strand, within Atu3424 at 471.285 kb on - strand, within Atu3424 at 471.289 kb on + strand, within Atu3424 at 471.358 kb on - strand, within Atu3424 at 471.470 kb on - strand, within Atu3424 at 471.550 kb on - strand, within Atu3424 at 471.623 kb on + strand, within Atu3424 at 471.626 kb on - strand, within Atu3424 at 471.631 kb on - strand, within Atu3424 at 471.631 kb on - strand, within Atu3424 at 471.701 kb on + strand, within Atu3424 at 471.721 kb on + strand, within Atu3424 at 471.726 kb on + strand, within Atu3424 at 471.729 kb on - strand, within Atu3424 at 471.815 kb on - strand, within Atu3424 at 471.842 kb on + strand, within Atu3424 at 471.864 kb on + strand, within Atu3424 at 471.867 kb on - strand, within Atu3424 at 472.165 kb on + strand, within Atu3425 at 472.260 kb on - strand, within Atu3425 at 472.275 kb on - strand, within Atu3425 at 472.403 kb on - strand, within Atu3425 at 472.414 kb on + strand, within Atu3425 at 472.425 kb on + strand, within Atu3425 at 472.497 kb on + strand, within Atu3425 at 472.523 kb on + strand, within Atu3425 at 472.655 kb on + strand at 472.681 kb on - strand at 472.932 kb on + strand, within Atu3426 at 473.005 kb on + strand, within Atu3426 at 473.008 kb on - strand, within Atu3426 at 473.008 kb on - strand, within Atu3426 at 473.008 kb on - strand, within Atu3426 at 473.045 kb on + strand, within Atu3426
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 470,109 - Atu3421 0.78 -0.3 470,126 + Atu3421 0.80 +1.1 470,303 - +0.9 470,448 + +0.1 470,448 + +0.5 470,612 + -0.5 470,965 - Atu3423 0.75 +3.5 471,013 - Atu3423 0.86 +0.2 471,038 + -0.3 471,051 - +1.5 471,056 - +1.4 471,177 - -0.5 471,254 - Atu3424 0.16 -0.5 471,254 - Atu3424 0.16 +1.0 471,285 - Atu3424 0.19 +0.5 471,289 + Atu3424 0.19 -1.0 471,358 - Atu3424 0.27 +1.6 471,470 - Atu3424 0.39 -1.7 471,550 - Atu3424 0.47 +1.1 471,623 + Atu3424 0.55 +1.2 471,626 - Atu3424 0.55 +0.6 471,631 - Atu3424 0.56 +0.7 471,631 - Atu3424 0.56 +1.3 471,701 + Atu3424 0.63 -0.3 471,721 + Atu3424 0.65 -0.1 471,726 + Atu3424 0.66 +0.3 471,729 - Atu3424 0.66 +0.1 471,815 - Atu3424 0.75 +0.7 471,842 + Atu3424 0.78 +1.9 471,864 + Atu3424 0.80 +0.0 471,867 - Atu3424 0.81 +1.0 472,165 + Atu3425 0.12 +0.8 472,260 - Atu3425 0.29 +1.1 472,275 - Atu3425 0.32 +0.5 472,403 - Atu3425 0.55 -0.9 472,414 + Atu3425 0.57 -1.4 472,425 + Atu3425 0.59 +0.5 472,497 + Atu3425 0.73 -1.0 472,523 + Atu3425 0.77 +0.1 472,655 + +0.0 472,681 - -1.0 472,932 + Atu3426 0.11 +2.2 473,005 + Atu3426 0.17 -0.2 473,008 - Atu3426 0.18 -1.4 473,008 - Atu3426 0.18 -0.5 473,008 - Atu3426 0.18 +0.3 473,045 + Atu3426 0.21 +0.5
Or see this region's nucleotide sequence