Strain Fitness in Agrobacterium fabrum C58 around Atu3404

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3403 and Atu3404 are separated by 90 nucleotidesAtu3404 and Atu3405 are separated by 15 nucleotides Atu3403: Atu3403 - succinate semialdehyde dehydrogenase, at 447,669 to 449,126 Atu3403 Atu3404: Atu3404 - oxidoreductase, at 449,217 to 450,491 Atu3404 Atu3405: Atu3405 - haloalkanoic acid dehalogenase, at 450,507 to 451,175 Atu3405 Position (kb) 449 450 451Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 448.369 kb on + strand, within Atu3403at 448.412 kb on - strand, within Atu3403at 448.412 kb on - strand, within Atu3403at 448.550 kb on + strand, within Atu3403at 448.558 kb on - strand, within Atu3403at 448.721 kb on + strand, within Atu3403at 448.735 kb on + strand, within Atu3403at 448.762 kb on + strand, within Atu3403at 448.896 kb on + strand, within Atu3403at 448.910 kb on - strand, within Atu3403at 448.930 kb on - strand, within Atu3403at 449.022 kb on + strandat 449.030 kb on - strandat 449.072 kb on - strandat 449.109 kb on - strandat 449.128 kb on - strandat 449.266 kb on + strandat 449.266 kb on + strandat 449.274 kb on - strandat 449.304 kb on + strandat 449.304 kb on + strandat 449.304 kb on + strandat 449.338 kb on + strandat 449.347 kb on + strand, within Atu3404at 449.374 kb on + strand, within Atu3404at 449.374 kb on + strand, within Atu3404at 449.374 kb on + strand, within Atu3404at 449.382 kb on - strand, within Atu3404at 449.382 kb on - strand, within Atu3404at 449.473 kb on - strand, within Atu3404at 449.607 kb on + strand, within Atu3404at 449.624 kb on + strand, within Atu3404at 449.632 kb on - strand, within Atu3404at 449.674 kb on - strand, within Atu3404at 449.697 kb on - strand, within Atu3404at 449.697 kb on - strand, within Atu3404at 449.780 kb on + strand, within Atu3404at 449.780 kb on + strand, within Atu3404at 449.788 kb on - strand, within Atu3404at 449.794 kb on + strand, within Atu3404at 449.815 kb on + strand, within Atu3404at 449.845 kb on + strand, within Atu3404at 449.864 kb on + strand, within Atu3404at 449.872 kb on - strand, within Atu3404at 449.872 kb on - strand, within Atu3404at 449.927 kb on - strand, within Atu3404at 450.123 kb on - strand, within Atu3404at 450.207 kb on + strand, within Atu3404at 450.212 kb on + strand, within Atu3404at 450.215 kb on - strand, within Atu3404at 450.375 kb on + strandat 450.422 kb on - strandat 450.433 kb on - strandat 450.440 kb on - strandat 450.502 kb on + strandat 450.524 kb on - strandat 450.586 kb on - strand, within Atu3405at 450.603 kb on - strand, within Atu3405at 450.740 kb on + strand, within Atu3405at 450.763 kb on + strand, within Atu3405at 450.763 kb on + strand, within Atu3405at 450.763 kb on + strand, within Atu3405at 450.763 kb on + strand, within Atu3405at 450.769 kb on - strand, within Atu3405at 450.771 kb on - strand, within Atu3405at 450.825 kb on - strand, within Atu3405at 450.825 kb on - strand, within Atu3405at 450.853 kb on + strand, within Atu3405at 450.853 kb on + strand, within Atu3405at 450.876 kb on - strand, within Atu3405at 450.941 kb on - strand, within Atu3405at 450.966 kb on + strand, within Atu3405at 450.974 kb on - strand, within Atu3405at 451.015 kb on + strand, within Atu3405at 451.019 kb on + strand, within Atu3405at 451.242 kb on + strandat 451.341 kb on - strandat 451.424 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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448,369 + Atu3403 0.48 -4.2
448,412 - Atu3403 0.51 +2.1
448,412 - Atu3403 0.51 +0.5
448,550 + Atu3403 0.60 -1.5
448,558 - Atu3403 0.61 +1.7
448,721 + Atu3403 0.72 +0.6
448,735 + Atu3403 0.73 +1.3
448,762 + Atu3403 0.75 -0.5
448,896 + Atu3403 0.84 +0.3
448,910 - Atu3403 0.85 -1.3
448,930 - Atu3403 0.86 -0.5
449,022 + +3.5
449,030 - -0.3
449,072 - -0.9
449,109 - -0.8
449,128 - +0.5
449,266 + +1.3
449,266 + +1.6
449,274 - +0.4
449,304 + +0.1
449,304 + -1.8
449,304 + -1.0
449,338 + +0.6
449,347 + Atu3404 0.10 +1.1
449,374 + Atu3404 0.12 +0.3
449,374 + Atu3404 0.12 +0.8
449,374 + Atu3404 0.12 +0.3
449,382 - Atu3404 0.13 -0.6
449,382 - Atu3404 0.13 +1.3
449,473 - Atu3404 0.20 +0.3
449,607 + Atu3404 0.31 -1.8
449,624 + Atu3404 0.32 -1.1
449,632 - Atu3404 0.33 -0.3
449,674 - Atu3404 0.36 +1.5
449,697 - Atu3404 0.38 +0.8
449,697 - Atu3404 0.38 -1.1
449,780 + Atu3404 0.44 +1.0
449,780 + Atu3404 0.44 +0.2
449,788 - Atu3404 0.45 -1.5
449,794 + Atu3404 0.45 -0.7
449,815 + Atu3404 0.47 +0.0
449,845 + Atu3404 0.49 +0.5
449,864 + Atu3404 0.51 +0.6
449,872 - Atu3404 0.51 +0.1
449,872 - Atu3404 0.51 -1.5
449,927 - Atu3404 0.56 +1.2
450,123 - Atu3404 0.71 +2.3
450,207 + Atu3404 0.78 +0.6
450,212 + Atu3404 0.78 +0.5
450,215 - Atu3404 0.78 -1.6
450,375 + +4.8
450,422 - -0.6
450,433 - +0.7
450,440 - +0.2
450,502 + +0.5
450,524 - +0.1
450,586 - Atu3405 0.12 -0.6
450,603 - Atu3405 0.14 +0.5
450,740 + Atu3405 0.35 +1.1
450,763 + Atu3405 0.38 -0.1
450,763 + Atu3405 0.38 +0.4
450,763 + Atu3405 0.38 -0.7
450,763 + Atu3405 0.38 -2.5
450,769 - Atu3405 0.39 -1.4
450,771 - Atu3405 0.39 -0.0
450,825 - Atu3405 0.48 -0.4
450,825 - Atu3405 0.48 -2.8
450,853 + Atu3405 0.52 -1.3
450,853 + Atu3405 0.52 -1.7
450,876 - Atu3405 0.55 +1.6
450,941 - Atu3405 0.65 -0.6
450,966 + Atu3405 0.69 -1.6
450,974 - Atu3405 0.70 -0.3
451,015 + Atu3405 0.76 +0.0
451,019 + Atu3405 0.77 -0.1
451,242 + +1.1
451,341 - -0.4
451,424 - +0.0

Or see this region's nucleotide sequence