Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3215 and Atu3216 overlap by 4 nucleotides Atu3216 and Atu3217 are separated by 3 nucleotides Atu3217 and Atu3218 are separated by 125 nucleotides Atu3218 and Atu8029 are separated by 169 nucleotides Atu8029 and Atu3219 are separated by 81 nucleotides
Atu3215: Atu3215 - oligopeptide ABC transporter ATPase, at 230,021 to 230,824
Atu3215
Atu3216: Atu3216 - oligopeptide ABC transporter ATPase, at 230,821 to 231,606
Atu3216
Atu3217: Atu3217 - aspartate aminotransferase, at 231,610 to 232,728
Atu3217
Atu3218: Atu3218 - hypothetical protein, at 232,854 to 233,129
Atu3218
Atu8029: Atu8029 - hypothetical protein, at 233,299 to 233,427
Atu8029
Atu3219: Atu3219 - dihydroxy-acid dehydratase, at 233,509 to 235,320
Atu3219
Position (kb) 231
232
233 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 230.627 kb on - strand, within Atu3215 at 230.660 kb on - strand, within Atu3215 at 230.666 kb on - strand, within Atu3215 at 230.749 kb on + strand at 230.750 kb on + strand at 230.755 kb on - strand at 230.755 kb on - strand at 230.758 kb on - strand at 230.838 kb on - strand at 230.853 kb on + strand at 230.853 kb on + strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.991 kb on + strand, within Atu3216 at 231.012 kb on - strand, within Atu3216 at 231.149 kb on - strand, within Atu3216 at 231.156 kb on + strand, within Atu3216 at 231.221 kb on + strand, within Atu3216 at 231.283 kb on - strand, within Atu3216 at 231.283 kb on - strand, within Atu3216 at 231.283 kb on - strand, within Atu3216 at 231.305 kb on + strand, within Atu3216 at 231.461 kb on - strand, within Atu3216 at 231.543 kb on + strand at 231.606 kb on + strand at 231.610 kb on - strand at 231.610 kb on - strand at 231.614 kb on - strand at 231.671 kb on - strand at 231.671 kb on - strand at 231.763 kb on + strand, within Atu3217 at 231.806 kb on + strand, within Atu3217 at 232.020 kb on + strand, within Atu3217 at 232.028 kb on - strand, within Atu3217 at 232.079 kb on + strand, within Atu3217 at 232.174 kb on - strand, within Atu3217 at 232.255 kb on - strand, within Atu3217 at 232.333 kb on - strand, within Atu3217 at 232.484 kb on - strand, within Atu3217 at 232.497 kb on - strand, within Atu3217 at 232.546 kb on - strand, within Atu3217 at 232.580 kb on - strand, within Atu3217 at 232.768 kb on + strand at 232.918 kb on + strand, within Atu3218 at 232.918 kb on + strand, within Atu3218 at 232.926 kb on - strand, within Atu3218 at 233.071 kb on - strand, within Atu3218 at 233.190 kb on - strand at 233.203 kb on + strand at 233.213 kb on + strand at 233.224 kb on + strand at 233.232 kb on - strand at 233.232 kb on - strand at 233.232 kb on - strand at 233.234 kb on + strand at 233.378 kb on + strand, within Atu8029 at 233.476 kb on - strand at 233.530 kb on + strand at 233.531 kb on + strand at 233.531 kb on + strand at 233.531 kb on + strand at 233.531 kb on + strand at 233.531 kb on + strand at 233.539 kb on - strand at 233.539 kb on - strand at 233.593 kb on - strand at 233.593 kb on - strand at 233.646 kb on + strand at 233.647 kb on + strand at 233.655 kb on - strand at 233.664 kb on - strand at 233.692 kb on + strand, within Atu3219 at 233.692 kb on + strand, within Atu3219 at 233.718 kb on - strand, within Atu3219
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 230,627 - Atu3215 0.75 -2.4 230,660 - Atu3215 0.79 -0.3 230,666 - Atu3215 0.80 -1.4 230,749 + +1.6 230,750 + -0.5 230,755 - +0.3 230,755 - -1.0 230,758 - -1.5 230,838 - -0.6 230,853 + +2.0 230,853 + +1.0 230,861 - -0.8 230,861 - +3.8 230,861 - +0.6 230,861 - -1.2 230,861 - -3.3 230,991 + Atu3216 0.22 -0.4 231,012 - Atu3216 0.24 -1.5 231,149 - Atu3216 0.42 +0.4 231,156 + Atu3216 0.43 +1.0 231,221 + Atu3216 0.51 +0.3 231,283 - Atu3216 0.59 +0.6 231,283 - Atu3216 0.59 -0.7 231,283 - Atu3216 0.59 -2.9 231,305 + Atu3216 0.62 +0.4 231,461 - Atu3216 0.81 -2.9 231,543 + +1.0 231,606 + -0.5 231,610 - +0.6 231,610 - +2.6 231,614 - -2.4 231,671 - +0.3 231,671 - +0.4 231,763 + Atu3217 0.14 +4.3 231,806 + Atu3217 0.18 -0.3 232,020 + Atu3217 0.37 +0.3 232,028 - Atu3217 0.37 +0.5 232,079 + Atu3217 0.42 +2.5 232,174 - Atu3217 0.50 +0.6 232,255 - Atu3217 0.58 -0.8 232,333 - Atu3217 0.65 -0.2 232,484 - Atu3217 0.78 +0.4 232,497 - Atu3217 0.79 -2.6 232,546 - Atu3217 0.84 -0.2 232,580 - Atu3217 0.87 +0.0 232,768 + +0.3 232,918 + Atu3218 0.23 +0.1 232,918 + Atu3218 0.23 +0.2 232,926 - Atu3218 0.26 +1.2 233,071 - Atu3218 0.79 -1.8 233,190 - -0.3 233,203 + +0.5 233,213 + +0.2 233,224 + -0.9 233,232 - +1.3 233,232 - -0.3 233,232 - +1.3 233,234 + +0.6 233,378 + Atu8029 0.61 +1.1 233,476 - -0.8 233,530 + -1.7 233,531 + -3.1 233,531 + -2.2 233,531 + -2.2 233,531 + +0.3 233,531 + -1.2 233,539 - -0.9 233,539 - -0.5 233,593 - -0.3 233,593 - -1.4 233,646 + -4.2 233,647 + -3.1 233,655 - -1.5 233,664 - -1.5 233,692 + Atu3219 0.10 -0.9 233,692 + Atu3219 0.10 +0.3 233,718 - Atu3219 0.12 -2.0
Or see this region's nucleotide sequence