Strain Fitness in Agrobacterium fabrum C58 around Atu1497

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1496 and Atu1497 are separated by 111 nucleotidesAtu1497 and Atu1498 overlap by 8 nucleotidesAtu1498 and Atu1499 are separated by 239 nucleotides Atu1496: Atu1496 - methionyl-tRNA synthetase, at 1,485,208 to 1,486,758 Atu1496 Atu1497: Atu1497 - DNA polymerase III, delta prime subunit, at 1,486,870 to 1,487,895 Atu1497 Atu1498: Atu1498 - thymydilate kinase, at 1,487,888 to 1,488,454 Atu1498 Atu1499: Atu1499 - penicillin binding protein, at 1,488,694 to 1,489,866 Atu1499 Position (kb) 1486 1487 1488Strain fitness (log2 ratio) -1 0 1 2at 1487.899 kb on - strandat 1488.603 kb on + strandat 1488.603 kb on + strandat 1488.868 kb on + strand, within Atu1499

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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1,487,899 - +2.1
1,488,603 + +1.9
1,488,603 + -0.7
1,488,868 + Atu1499 0.15 +0.3

Or see this region's nucleotide sequence