Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0732 and Atu0733 are separated by 10 nucleotides Atu0733 and Atu0734 are separated by 48 nucleotides Atu0734 and Atu0735 are separated by 208 nucleotides
Atu0732: Atu0732 - acyl-CoA dehydrogenase, at 731,156 to 732,940
Atu0732
Atu0733: Atu0733 - enoyl-CoA hydratase/isomerase, at 732,951 to 733,709
Atu0733
Atu0734: Atu0734 - hypothetical protein, at 733,758 to 734,114
Atu0734
Atu0735: Atu0735 - RNA methyltransferase, at 734,323 to 735,573
Atu0735
Position (kb) 733
734
735 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 732.768 kb on + strand at 732.838 kb on - strand at 732.911 kb on - strand at 732.934 kb on + strand at 732.934 kb on + strand at 732.937 kb on - strand at 732.969 kb on - strand at 732.998 kb on + strand at 732.998 kb on + strand at 732.999 kb on + strand at 733.059 kb on - strand, within Atu0733 at 733.134 kb on - strand, within Atu0733 at 733.196 kb on + strand, within Atu0733 at 733.301 kb on - strand, within Atu0733 at 733.348 kb on - strand, within Atu0733 at 733.360 kb on + strand, within Atu0733 at 733.384 kb on + strand, within Atu0733 at 733.384 kb on + strand, within Atu0733 at 733.384 kb on + strand, within Atu0733 at 733.426 kb on + strand, within Atu0733 at 733.548 kb on - strand, within Atu0733 at 733.569 kb on + strand, within Atu0733 at 733.569 kb on + strand, within Atu0733 at 733.618 kb on - strand, within Atu0733 at 733.659 kb on + strand at 733.666 kb on + strand at 733.666 kb on - strand at 733.721 kb on + strand at 733.758 kb on + strand at 733.765 kb on + strand at 733.766 kb on - strand at 733.773 kb on - strand at 733.775 kb on + strand at 733.781 kb on - strand at 733.827 kb on + strand, within Atu0734 at 733.866 kb on + strand, within Atu0734 at 733.910 kb on + strand, within Atu0734 at 733.918 kb on - strand, within Atu0734 at 733.995 kb on + strand, within Atu0734 at 734.030 kb on - strand, within Atu0734 at 734.089 kb on - strand at 734.264 kb on - strand at 734.272 kb on + strand at 734.280 kb on - strand at 734.470 kb on + strand, within Atu0735 at 734.597 kb on - strand, within Atu0735 at 734.613 kb on + strand, within Atu0735 at 734.613 kb on + strand, within Atu0735 at 734.621 kb on - strand, within Atu0735 at 734.653 kb on + strand, within Atu0735 at 734.661 kb on - strand, within Atu0735 at 734.729 kb on + strand, within Atu0735 at 734.737 kb on - strand, within Atu0735 at 734.774 kb on + strand, within Atu0735
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 732,768 + -1.8 732,838 - -1.0 732,911 - +0.4 732,934 + +1.2 732,934 + +0.5 732,937 - -0.3 732,969 - +1.1 732,998 + -0.9 732,998 + +1.3 732,999 + -0.2 733,059 - Atu0733 0.14 +0.1 733,134 - Atu0733 0.24 -0.6 733,196 + Atu0733 0.32 +0.7 733,301 - Atu0733 0.46 +0.6 733,348 - Atu0733 0.52 -0.1 733,360 + Atu0733 0.54 +0.9 733,384 + Atu0733 0.57 +0.1 733,384 + Atu0733 0.57 -0.0 733,384 + Atu0733 0.57 +1.9 733,426 + Atu0733 0.63 +1.3 733,548 - Atu0733 0.79 -0.4 733,569 + Atu0733 0.81 -0.2 733,569 + Atu0733 0.81 +0.8 733,618 - Atu0733 0.88 +0.9 733,659 + +0.4 733,666 + +0.2 733,666 - +1.3 733,721 + +0.1 733,758 + +1.2 733,765 + -0.3 733,766 - -1.3 733,773 - -0.1 733,775 + +0.1 733,781 - -0.8 733,827 + Atu0734 0.19 -0.9 733,866 + Atu0734 0.30 -0.4 733,910 + Atu0734 0.43 -2.8 733,918 - Atu0734 0.45 +0.1 733,995 + Atu0734 0.66 +0.8 734,030 - Atu0734 0.76 +0.8 734,089 - -0.0 734,264 - -0.1 734,272 + +0.7 734,280 - +1.7 734,470 + Atu0735 0.12 -0.4 734,597 - Atu0735 0.22 -0.9 734,613 + Atu0735 0.23 -1.0 734,613 + Atu0735 0.23 -0.8 734,621 - Atu0735 0.24 +0.9 734,653 + Atu0735 0.26 -0.4 734,661 - Atu0735 0.27 +0.5 734,729 + Atu0735 0.32 -0.3 734,737 - Atu0735 0.33 +0.7 734,774 + Atu0735 0.36 +0.5
Or see this region's nucleotide sequence