Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0343 and Atu0344 are separated by 94 nucleotides Atu0344 and Atu0345 are separated by 190 nucleotides
Atu0343: Atu0343 - two component sensor kinase/response regulator hybrid, at 333,482 to 335,722
Atu0343
Atu0344: Atu0344 - hypothetical protein, at 335,817 to 336,698
Atu0344
Atu0345: Atu0345 - DNA mismatch repair protein, MutS family, at 336,889 to 339,540
Atu0345
Position (kb) 335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 334.819 kb on - strand, within Atu0343 at 334.819 kb on - strand, within Atu0343 at 334.824 kb on + strand, within Atu0343 at 334.824 kb on - strand, within Atu0343 at 334.824 kb on - strand, within Atu0343 at 334.895 kb on - strand, within Atu0343 at 334.902 kb on + strand, within Atu0343 at 335.011 kb on - strand, within Atu0343 at 335.011 kb on - strand, within Atu0343 at 335.020 kb on + strand, within Atu0343 at 335.040 kb on + strand, within Atu0343 at 335.084 kb on + strand, within Atu0343 at 335.086 kb on + strand, within Atu0343 at 335.086 kb on + strand, within Atu0343 at 335.094 kb on - strand, within Atu0343 at 335.094 kb on - strand, within Atu0343 at 335.124 kb on - strand, within Atu0343 at 335.135 kb on + strand, within Atu0343 at 335.143 kb on - strand, within Atu0343 at 335.145 kb on + strand, within Atu0343 at 335.197 kb on - strand, within Atu0343 at 335.233 kb on + strand, within Atu0343 at 335.255 kb on + strand, within Atu0343 at 335.258 kb on - strand, within Atu0343 at 335.258 kb on - strand, within Atu0343 at 335.258 kb on - strand, within Atu0343 at 335.258 kb on - strand, within Atu0343 at 335.296 kb on - strand, within Atu0343 at 335.307 kb on + strand, within Atu0343 at 335.433 kb on + strand, within Atu0343 at 335.639 kb on + strand at 335.647 kb on - strand at 335.679 kb on - strand at 335.706 kb on - strand at 335.706 kb on - strand at 335.884 kb on - strand at 335.886 kb on + strand at 335.886 kb on + strand at 335.886 kb on + strand at 335.886 kb on + strand at 335.886 kb on + strand at 335.894 kb on - strand at 335.894 kb on - strand at 335.894 kb on - strand at 335.894 kb on - strand at 335.987 kb on + strand, within Atu0344 at 336.030 kb on + strand, within Atu0344 at 336.182 kb on - strand, within Atu0344 at 336.243 kb on - strand, within Atu0344 at 336.388 kb on - strand, within Atu0344 at 336.455 kb on - strand, within Atu0344 at 336.500 kb on + strand, within Atu0344 at 336.517 kb on - strand, within Atu0344 at 336.546 kb on + strand, within Atu0344 at 336.756 kb on + strand at 336.756 kb on + strand at 336.756 kb on + strand at 336.764 kb on - strand at 336.766 kb on + strand at 336.834 kb on + strand at 336.850 kb on + strand at 336.853 kb on - strand at 336.865 kb on - strand at 336.870 kb on - strand at 336.984 kb on + strand at 337.005 kb on + strand at 337.015 kb on - strand at 337.015 kb on - strand at 337.040 kb on - strand at 337.078 kb on + strand at 337.105 kb on - strand at 337.118 kb on - strand at 337.292 kb on + strand, within Atu0345 at 337.314 kb on + strand, within Atu0345 at 337.336 kb on + strand, within Atu0345 at 337.462 kb on + strand, within Atu0345 at 337.506 kb on - strand, within Atu0345 at 337.513 kb on - strand, within Atu0345 at 337.523 kb on + strand, within Atu0345 at 337.611 kb on + strand, within Atu0345 at 337.673 kb on - strand, within Atu0345
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 334,819 - Atu0343 0.60 -0.6 334,819 - Atu0343 0.60 -1.4 334,824 + Atu0343 0.60 -0.5 334,824 - Atu0343 0.60 +0.4 334,824 - Atu0343 0.60 -0.7 334,895 - Atu0343 0.63 -0.1 334,902 + Atu0343 0.63 -2.2 335,011 - Atu0343 0.68 +0.7 335,011 - Atu0343 0.68 +0.3 335,020 + Atu0343 0.69 -2.9 335,040 + Atu0343 0.70 +0.0 335,084 + Atu0343 0.71 +2.1 335,086 + Atu0343 0.72 +0.3 335,086 + Atu0343 0.72 +0.4 335,094 - Atu0343 0.72 +0.4 335,094 - Atu0343 0.72 +1.2 335,124 - Atu0343 0.73 -2.1 335,135 + Atu0343 0.74 +0.5 335,143 - Atu0343 0.74 +0.1 335,145 + Atu0343 0.74 -0.3 335,197 - Atu0343 0.77 -0.3 335,233 + Atu0343 0.78 +0.7 335,255 + Atu0343 0.79 -0.2 335,258 - Atu0343 0.79 -1.5 335,258 - Atu0343 0.79 -0.3 335,258 - Atu0343 0.79 +0.8 335,258 - Atu0343 0.79 -1.2 335,296 - Atu0343 0.81 +2.0 335,307 + Atu0343 0.81 +1.6 335,433 + Atu0343 0.87 -0.1 335,639 + -2.7 335,647 - +0.8 335,679 - -0.7 335,706 - +2.7 335,706 - -0.2 335,884 - +1.6 335,886 + +0.2 335,886 + -0.9 335,886 + -2.8 335,886 + +0.0 335,886 + -0.1 335,894 - -0.1 335,894 - -0.7 335,894 - -2.8 335,894 - +1.5 335,987 + Atu0344 0.19 +0.2 336,030 + Atu0344 0.24 -0.9 336,182 - Atu0344 0.41 +0.7 336,243 - Atu0344 0.48 +2.8 336,388 - Atu0344 0.65 +0.8 336,455 - Atu0344 0.72 +1.9 336,500 + Atu0344 0.77 +1.5 336,517 - Atu0344 0.79 -0.3 336,546 + Atu0344 0.83 +0.2 336,756 + -0.0 336,756 + +2.3 336,756 + -0.1 336,764 - -2.3 336,766 + +1.3 336,834 + +0.2 336,850 + +0.0 336,853 - -1.2 336,865 - +0.9 336,870 - +0.3 336,984 + -0.1 337,005 + +0.1 337,015 - -1.1 337,015 - -0.8 337,040 - +0.4 337,078 + +1.0 337,105 - -0.7 337,118 - -0.6 337,292 + Atu0345 0.15 -1.1 337,314 + Atu0345 0.16 -0.3 337,336 + Atu0345 0.17 +0.0 337,462 + Atu0345 0.22 +0.2 337,506 - Atu0345 0.23 -0.6 337,513 - Atu0345 0.24 +1.7 337,523 + Atu0345 0.24 -1.9 337,611 + Atu0345 0.27 -0.7 337,673 - Atu0345 0.30 -0.8
Or see this region's nucleotide sequence