Strain Fitness in Agrobacterium fabrum C58 around Atu0222

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0221 and Atu0222 overlap by 4 nucleotidesAtu0222 and Atu0223 are separated by 133 nucleotidesAtu0223 and Atu0224 are separated by 101 nucleotides Atu0221: Atu0221 - component of type IV pilus, at 226,493 to 228,076 Atu0221 Atu0222: Atu0222 - components of type IV pilus, at 228,073 to 228,879 Atu0222 Atu0223: Atu0223 - components of type IV pilus, prepilin peptidase, at 229,013 to 229,525 Atu0223 Atu0224: Atu0224 - components of type IV pilus, pilin subunit, at 229,627 to 229,818 Atu0224 Position (kb) 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 227.169 kb on + strand, within Atu0221at 227.177 kb on - strand, within Atu0221at 227.338 kb on - strand, within Atu0221at 227.485 kb on - strand, within Atu0221at 227.569 kb on - strand, within Atu0221at 227.571 kb on - strand, within Atu0221at 227.585 kb on + strand, within Atu0221at 227.764 kb on + strand, within Atu0221at 227.781 kb on + strand, within Atu0221at 227.786 kb on + strand, within Atu0221at 227.835 kb on + strand, within Atu0221at 227.835 kb on + strand, within Atu0221at 227.874 kb on + strand, within Atu0221at 227.875 kb on + strand, within Atu0221at 227.882 kb on - strand, within Atu0221at 228.043 kb on - strandat 228.162 kb on - strand, within Atu0222at 228.164 kb on - strand, within Atu0222at 228.164 kb on - strand, within Atu0222at 228.248 kb on + strand, within Atu0222at 228.248 kb on + strand, within Atu0222at 228.248 kb on + strand, within Atu0222at 228.248 kb on + strand, within Atu0222at 228.254 kb on + strand, within Atu0222at 228.256 kb on - strand, within Atu0222at 228.334 kb on - strand, within Atu0222at 228.356 kb on - strand, within Atu0222at 228.372 kb on - strand, within Atu0222at 228.392 kb on - strand, within Atu0222at 228.428 kb on - strand, within Atu0222at 228.460 kb on + strand, within Atu0222at 228.566 kb on + strand, within Atu0222at 228.566 kb on + strand, within Atu0222at 228.566 kb on + strand, within Atu0222at 228.574 kb on - strand, within Atu0222at 228.574 kb on - strand, within Atu0222at 228.583 kb on + strand, within Atu0222at 228.585 kb on - strand, within Atu0222at 228.661 kb on - strand, within Atu0222at 228.922 kb on + strandat 229.035 kb on + strandat 229.048 kb on - strandat 229.070 kb on - strand, within Atu0223at 229.121 kb on - strand, within Atu0223at 229.190 kb on + strand, within Atu0223at 229.218 kb on - strand, within Atu0223at 229.222 kb on + strand, within Atu0223at 229.272 kb on + strand, within Atu0223at 229.272 kb on + strand, within Atu0223at 229.280 kb on - strand, within Atu0223at 229.280 kb on - strand, within Atu0223at 229.431 kb on + strand, within Atu0223at 229.446 kb on - strand, within Atu0223at 229.466 kb on + strand, within Atu0223at 229.487 kb on - strandat 229.545 kb on + strandat 229.553 kb on - strandat 229.580 kb on + strandat 229.606 kb on - strandat 229.606 kb on - strandat 229.611 kb on - strandat 229.640 kb on + strandat 229.646 kb on + strandat 229.646 kb on + strandat 229.646 kb on + strandat 229.646 kb on + strandat 229.646 kb on + strandat 229.646 kb on + strandat 229.646 kb on + strandat 229.646 kb on + strandat 229.646 kb on + strandat 229.646 kb on + strandat 229.646 kb on + strandat 229.646 kb on + strandat 229.654 kb on - strand, within Atu0224at 229.654 kb on - strand, within Atu0224at 229.654 kb on - strand, within Atu0224at 229.654 kb on - strand, within Atu0224at 229.654 kb on - strand, within Atu0224at 229.654 kb on - strand, within Atu0224at 229.654 kb on - strand, within Atu0224at 229.654 kb on - strand, within Atu0224at 229.687 kb on + strand, within Atu0224at 229.696 kb on - strand, within Atu0224at 229.718 kb on + strand, within Atu0224at 229.738 kb on + strand, within Atu0224at 229.744 kb on - strand, within Atu0224at 229.857 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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227,169 + Atu0221 0.43 -0.4
227,177 - Atu0221 0.43 -1.7
227,338 - Atu0221 0.53 -0.4
227,485 - Atu0221 0.63 +0.3
227,569 - Atu0221 0.68 -0.4
227,571 - Atu0221 0.68 -0.9
227,585 + Atu0221 0.69 -1.3
227,764 + Atu0221 0.80 +0.2
227,781 + Atu0221 0.81 -0.4
227,786 + Atu0221 0.82 +0.8
227,835 + Atu0221 0.85 -1.4
227,835 + Atu0221 0.85 -2.8
227,874 + Atu0221 0.87 -0.6
227,875 + Atu0221 0.87 +1.4
227,882 - Atu0221 0.88 -0.1
228,043 - -0.3
228,162 - Atu0222 0.11 +0.1
228,164 - Atu0222 0.11 +0.1
228,164 - Atu0222 0.11 -1.2
228,248 + Atu0222 0.22 +0.2
228,248 + Atu0222 0.22 -0.2
228,248 + Atu0222 0.22 -0.3
228,248 + Atu0222 0.22 -0.2
228,254 + Atu0222 0.22 -0.1
228,256 - Atu0222 0.23 -1.1
228,334 - Atu0222 0.32 -1.7
228,356 - Atu0222 0.35 -0.6
228,372 - Atu0222 0.37 +0.0
228,392 - Atu0222 0.40 -1.5
228,428 - Atu0222 0.44 +0.2
228,460 + Atu0222 0.48 +1.1
228,566 + Atu0222 0.61 -1.1
228,566 + Atu0222 0.61 -0.2
228,566 + Atu0222 0.61 +0.2
228,574 - Atu0222 0.62 -0.6
228,574 - Atu0222 0.62 -0.0
228,583 + Atu0222 0.63 -2.2
228,585 - Atu0222 0.63 +0.4
228,661 - Atu0222 0.73 -3.3
228,922 + +0.0
229,035 + -1.0
229,048 - -1.0
229,070 - Atu0223 0.11 +0.5
229,121 - Atu0223 0.21 +0.3
229,190 + Atu0223 0.35 +0.1
229,218 - Atu0223 0.40 -0.1
229,222 + Atu0223 0.41 -2.5
229,272 + Atu0223 0.50 +1.1
229,272 + Atu0223 0.50 -1.5
229,280 - Atu0223 0.52 -2.3
229,280 - Atu0223 0.52 -2.6
229,431 + Atu0223 0.81 -1.0
229,446 - Atu0223 0.84 -1.9
229,466 + Atu0223 0.88 -0.5
229,487 - -0.2
229,545 + +0.0
229,553 - +0.5
229,580 + -0.6
229,606 - -1.3
229,606 - +0.7
229,611 - -1.3
229,640 + +0.9
229,646 + -0.1
229,646 + -0.6
229,646 + +0.4
229,646 + -2.3
229,646 + +0.8
229,646 + -0.0
229,646 + -3.1
229,646 + -0.6
229,646 + -1.6
229,646 + -0.7
229,646 + +1.1
229,646 + -0.6
229,654 - Atu0224 0.14 -0.1
229,654 - Atu0224 0.14 -1.8
229,654 - Atu0224 0.14 -0.7
229,654 - Atu0224 0.14 +0.1
229,654 - Atu0224 0.14 +0.8
229,654 - Atu0224 0.14 -0.7
229,654 - Atu0224 0.14 +2.6
229,654 - Atu0224 0.14 -0.4
229,687 + Atu0224 0.31 -1.1
229,696 - Atu0224 0.36 +0.5
229,718 + Atu0224 0.47 -1.2
229,738 + Atu0224 0.58 -2.1
229,744 - Atu0224 0.61 -0.2
229,857 + +0.3

Or see this region's nucleotide sequence