Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0200 and Atu0201 are separated by 168 nucleotides Atu0201 and Atu0202 are separated by 158 nucleotides Atu0202 and Atu0203 are separated by 24 nucleotides
Atu0200: Atu0200 - hypothetical protein, at 204,265 to 205,311
Atu0200
Atu0201: Atu0201 - hypothetical protein, at 205,480 to 205,950
Atu0201
Atu0202: Atu0202 - ABC transporter, substrate binding protein (iron), at 206,109 to 207,173
Atu0202
Atu0203: Atu0203 - hypothetical protein, at 207,198 to 208,115
Atu0203
Position (kb) 206
207
208 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 205.161 kb on + strand, within Atu0200 at 205.231 kb on - strand at 205.245 kb on + strand at 205.248 kb on - strand at 205.298 kb on + strand at 205.435 kb on + strand at 205.510 kb on - strand at 205.561 kb on - strand, within Atu0201 at 205.561 kb on - strand, within Atu0201 at 205.975 kb on + strand at 206.062 kb on - strand at 206.185 kb on - strand at 206.227 kb on - strand, within Atu0202 at 206.236 kb on + strand, within Atu0202 at 206.241 kb on + strand, within Atu0202 at 206.246 kb on + strand, within Atu0202 at 206.317 kb on - strand, within Atu0202 at 206.338 kb on - strand, within Atu0202 at 206.338 kb on - strand, within Atu0202 at 206.340 kb on - strand, within Atu0202 at 206.401 kb on - strand, within Atu0202 at 206.408 kb on + strand, within Atu0202 at 206.408 kb on + strand, within Atu0202 at 206.408 kb on + strand, within Atu0202 at 206.432 kb on + strand, within Atu0202 at 206.561 kb on - strand, within Atu0202 at 206.600 kb on - strand, within Atu0202 at 206.600 kb on - strand, within Atu0202 at 206.670 kb on + strand, within Atu0202 at 206.702 kb on + strand, within Atu0202 at 206.813 kb on + strand, within Atu0202 at 206.813 kb on + strand, within Atu0202 at 206.878 kb on - strand, within Atu0202 at 207.027 kb on - strand, within Atu0202 at 207.034 kb on + strand, within Atu0202 at 207.132 kb on - strand at 207.265 kb on + strand at 207.273 kb on - strand at 207.275 kb on + strand at 207.380 kb on + strand, within Atu0203 at 207.387 kb on + strand, within Atu0203 at 207.395 kb on - strand, within Atu0203 at 207.497 kb on + strand, within Atu0203 at 207.503 kb on + strand, within Atu0203 at 207.710 kb on + strand, within Atu0203 at 207.834 kb on - strand, within Atu0203 at 207.834 kb on - strand, within Atu0203 at 207.910 kb on - strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.004 kb on + strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.012 kb on - strand, within Atu0203 at 208.122 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 205,161 + Atu0200 0.86 -1.4 205,231 - -1.4 205,245 + -0.1 205,248 - +1.2 205,298 + -0.3 205,435 + +0.6 205,510 - +0.5 205,561 - Atu0201 0.17 +0.4 205,561 - Atu0201 0.17 -1.8 205,975 + -0.0 206,062 - -1.0 206,185 - -2.3 206,227 - Atu0202 0.11 -1.2 206,236 + Atu0202 0.12 +1.2 206,241 + Atu0202 0.12 -1.1 206,246 + Atu0202 0.13 -2.1 206,317 - Atu0202 0.20 -0.2 206,338 - Atu0202 0.22 -0.2 206,338 - Atu0202 0.22 -0.1 206,340 - Atu0202 0.22 +0.7 206,401 - Atu0202 0.27 -1.4 206,408 + Atu0202 0.28 -0.1 206,408 + Atu0202 0.28 -0.2 206,408 + Atu0202 0.28 +0.9 206,432 + Atu0202 0.30 +0.0 206,561 - Atu0202 0.42 +0.0 206,600 - Atu0202 0.46 +2.8 206,600 - Atu0202 0.46 +0.3 206,670 + Atu0202 0.53 -1.3 206,702 + Atu0202 0.56 +1.2 206,813 + Atu0202 0.66 -0.4 206,813 + Atu0202 0.66 -1.1 206,878 - Atu0202 0.72 +0.1 207,027 - Atu0202 0.86 +0.5 207,034 + Atu0202 0.87 +0.6 207,132 - +1.5 207,265 + +2.5 207,273 - -0.5 207,275 + -1.9 207,380 + Atu0203 0.20 -2.0 207,387 + Atu0203 0.21 +0.5 207,395 - Atu0203 0.21 -0.1 207,497 + Atu0203 0.33 -1.5 207,503 + Atu0203 0.33 +1.0 207,710 + Atu0203 0.56 +0.5 207,834 - Atu0203 0.69 -1.1 207,834 - Atu0203 0.69 +0.1 207,910 - Atu0203 0.78 +0.3 208,004 + Atu0203 0.88 -0.0 208,004 + Atu0203 0.88 -1.8 208,004 + Atu0203 0.88 +1.7 208,004 + Atu0203 0.88 -1.5 208,004 + Atu0203 0.88 +0.6 208,004 + Atu0203 0.88 -0.8 208,004 + Atu0203 0.88 +1.3 208,004 + Atu0203 0.88 +0.7 208,004 + Atu0203 0.88 +0.7 208,004 + Atu0203 0.88 -1.9 208,004 + Atu0203 0.88 +0.0 208,012 - Atu0203 0.89 -1.9 208,012 - Atu0203 0.89 +0.6 208,012 - Atu0203 0.89 +0.2 208,012 - Atu0203 0.89 +0.8 208,012 - Atu0203 0.89 -2.2 208,012 - Atu0203 0.89 -0.4 208,012 - Atu0203 0.89 -1.5 208,012 - Atu0203 0.89 -0.7 208,012 - Atu0203 0.89 +1.2 208,012 - Atu0203 0.89 +0.6 208,012 - Atu0203 0.89 -0.9 208,012 - Atu0203 0.89 -0.3 208,012 - Atu0203 0.89 -0.2 208,012 - Atu0203 0.89 +0.3 208,012 - Atu0203 0.89 +3.2 208,012 - Atu0203 0.89 -0.0 208,012 - Atu0203 0.89 -2.7 208,012 - Atu0203 0.89 +1.7 208,122 + -1.9
Or see this region's nucleotide sequence