Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3582 and Atu3583 are separated by 17 nucleotides Atu3583 and Atu8189 are separated by 34 nucleotides Atu8189 and Atu3585 are separated by 125 nucleotides
Atu3582: Atu3582 - hypothetical protein, at 638,787 to 639,206
Atu3582
Atu3583: Atu3583 - hypothetical protein, at 639,224 to 639,784
Atu3583
Atu8189: Atu8189 - hypothetical protein, at 639,819 to 640,196
Atu8189
Atu3585: Atu3585 - glutathione S-transferase, at 640,322 to 641,218
Atu3585
Position (kb) 639
640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 638.877 kb on + strand, within Atu3582 at 638.970 kb on + strand, within Atu3582 at 639.011 kb on + strand, within Atu3582 at 639.013 kb on + strand, within Atu3582 at 639.016 kb on + strand, within Atu3582 at 639.026 kb on + strand, within Atu3582 at 639.186 kb on + strand at 639.338 kb on + strand, within Atu3583 at 639.346 kb on - strand, within Atu3583 at 639.346 kb on - strand, within Atu3583 at 639.463 kb on + strand, within Atu3583 at 639.582 kb on + strand, within Atu3583 at 639.590 kb on - strand, within Atu3583 at 639.743 kb on + strand at 639.748 kb on + strand at 639.756 kb on - strand at 639.756 kb on - strand at 639.756 kb on - strand at 639.855 kb on + strand at 639.887 kb on - strand, within Atu8189 at 639.894 kb on - strand, within Atu8189 at 639.894 kb on - strand, within Atu8189 at 640.041 kb on + strand, within Atu8189 at 640.056 kb on + strand, within Atu8189 at 640.099 kb on - strand, within Atu8189 at 640.204 kb on + strand at 640.237 kb on + strand at 640.237 kb on + strand at 640.237 kb on + strand at 640.239 kb on - strand at 640.269 kb on - strand at 640.426 kb on + strand, within Atu3585 at 640.518 kb on + strand, within Atu3585 at 640.583 kb on - strand, within Atu3585 at 640.583 kb on - strand, within Atu3585 at 640.698 kb on - strand, within Atu3585 at 640.755 kb on + strand, within Atu3585 at 640.866 kb on + strand, within Atu3585 at 640.874 kb on - strand, within Atu3585 at 641.016 kb on + strand, within Atu3585 at 641.095 kb on + strand, within Atu3585 at 641.103 kb on - strand, within Atu3585 at 641.121 kb on + strand, within Atu3585 at 641.139 kb on + strand at 641.156 kb on + strand at 641.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 638,877 + Atu3582 0.21 -1.3 638,970 + Atu3582 0.44 +1.5 639,011 + Atu3582 0.53 +0.2 639,013 + Atu3582 0.54 +0.3 639,016 + Atu3582 0.55 -1.1 639,026 + Atu3582 0.57 -0.2 639,186 + +0.1 639,338 + Atu3583 0.20 +0.7 639,346 - Atu3583 0.22 -2.5 639,346 - Atu3583 0.22 -0.9 639,463 + Atu3583 0.43 -0.2 639,582 + Atu3583 0.64 -2.3 639,590 - Atu3583 0.65 -3.1 639,743 + -0.6 639,748 + -0.1 639,756 - +1.4 639,756 - -0.9 639,756 - +0.6 639,855 + +0.1 639,887 - Atu8189 0.18 +0.0 639,894 - Atu8189 0.20 -0.8 639,894 - Atu8189 0.20 -0.6 640,041 + Atu8189 0.59 -0.1 640,056 + Atu8189 0.63 +0.8 640,099 - Atu8189 0.74 -0.2 640,204 + -0.7 640,237 + -0.0 640,237 + -0.6 640,237 + +0.5 640,239 - +0.7 640,269 - +1.5 640,426 + Atu3585 0.12 -0.3 640,518 + Atu3585 0.22 -1.1 640,583 - Atu3585 0.29 +1.8 640,583 - Atu3585 0.29 -1.9 640,698 - Atu3585 0.42 +0.2 640,755 + Atu3585 0.48 +0.8 640,866 + Atu3585 0.61 +0.2 640,874 - Atu3585 0.62 +1.2 641,016 + Atu3585 0.77 +0.1 641,095 + Atu3585 0.86 +2.4 641,103 - Atu3585 0.87 +0.8 641,121 + Atu3585 0.89 -1.2 641,139 + +0.0 641,156 + +0.1 641,165 - -0.1
Or see this region's nucleotide sequence