Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5199 and Atu5200 are separated by 366 nucleotides Atu5200 and Atu5201 are separated by 272 nucleotides
Atu5199: Atu5199 - oxidoreductase, at 195,232 to 196,332
Atu5199
Atu5200: Atu5200 - efflux protein, at 196,699 to 198,057
Atu5200
Atu5201: Atu5201 - pirin, at 198,330 to 199,184
Atu5201
Position (kb) 196
197
198
199 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 195.734 kb on - strand, within Atu5199 at 195.969 kb on + strand, within Atu5199 at 195.974 kb on + strand, within Atu5199 at 196.026 kb on - strand, within Atu5199 at 196.043 kb on + strand, within Atu5199 at 196.156 kb on + strand, within Atu5199 at 196.156 kb on + strand, within Atu5199 at 196.156 kb on + strand, within Atu5199 at 196.162 kb on - strand, within Atu5199 at 196.164 kb on - strand, within Atu5199 at 196.164 kb on - strand, within Atu5199 at 196.164 kb on - strand, within Atu5199 at 196.164 kb on - strand, within Atu5199 at 196.164 kb on - strand, within Atu5199 at 196.264 kb on + strand at 196.295 kb on + strand at 196.303 kb on - strand at 196.340 kb on + strand at 196.379 kb on - strand at 196.445 kb on + strand at 196.453 kb on - strand at 196.603 kb on + strand at 196.617 kb on + strand at 196.659 kb on - strand at 196.659 kb on - strand at 196.792 kb on + strand at 196.832 kb on + strand at 196.832 kb on + strand at 196.852 kb on + strand, within Atu5200 at 196.853 kb on - strand, within Atu5200 at 196.860 kb on + strand, within Atu5200 at 196.905 kb on + strand, within Atu5200 at 196.905 kb on + strand, within Atu5200 at 196.934 kb on + strand, within Atu5200 at 196.946 kb on + strand, within Atu5200 at 196.983 kb on - strand, within Atu5200 at 197.126 kb on + strand, within Atu5200 at 197.134 kb on - strand, within Atu5200 at 197.134 kb on - strand, within Atu5200 at 197.134 kb on - strand, within Atu5200 at 197.134 kb on - strand, within Atu5200 at 197.134 kb on - strand, within Atu5200 at 197.144 kb on - strand, within Atu5200 at 197.167 kb on - strand, within Atu5200 at 197.266 kb on - strand, within Atu5200 at 197.276 kb on + strand, within Atu5200 at 197.276 kb on + strand, within Atu5200 at 197.303 kb on + strand, within Atu5200 at 197.380 kb on + strand, within Atu5200 at 197.429 kb on - strand, within Atu5200 at 197.436 kb on - strand, within Atu5200 at 197.655 kb on - strand, within Atu5200 at 197.669 kb on - strand, within Atu5200 at 197.680 kb on - strand, within Atu5200 at 197.765 kb on + strand, within Atu5200 at 197.784 kb on + strand, within Atu5200 at 197.792 kb on - strand, within Atu5200 at 197.792 kb on - strand, within Atu5200 at 197.893 kb on + strand, within Atu5200 at 197.954 kb on + strand at 197.988 kb on - strand at 197.997 kb on + strand at 198.015 kb on + strand at 198.087 kb on - strand at 198.216 kb on + strand at 198.223 kb on + strand at 198.239 kb on - strand at 198.277 kb on + strand at 198.285 kb on - strand at 198.285 kb on - strand at 198.296 kb on + strand at 198.304 kb on - strand at 198.345 kb on + strand at 198.369 kb on + strand at 198.486 kb on + strand, within Atu5201 at 198.500 kb on + strand, within Atu5201 at 198.507 kb on - strand, within Atu5201 at 198.514 kb on - strand, within Atu5201 at 198.518 kb on + strand, within Atu5201 at 198.526 kb on + strand, within Atu5201 at 198.534 kb on - strand, within Atu5201 at 198.534 kb on - strand, within Atu5201 at 198.534 kb on - strand, within Atu5201 at 198.570 kb on + strand, within Atu5201 at 198.583 kb on - strand, within Atu5201 at 198.648 kb on + strand, within Atu5201 at 198.667 kb on - strand, within Atu5201 at 198.680 kb on + strand, within Atu5201 at 198.684 kb on + strand, within Atu5201 at 198.702 kb on + strand, within Atu5201 at 198.746 kb on - strand, within Atu5201 at 198.873 kb on + strand, within Atu5201 at 198.881 kb on - strand, within Atu5201 at 198.928 kb on - strand, within Atu5201 at 198.944 kb on + strand, within Atu5201 at 198.966 kb on + strand, within Atu5201 at 199.000 kb on + strand, within Atu5201 at 199.000 kb on - strand, within Atu5201 at 199.022 kb on + strand, within Atu5201 at 199.030 kb on - strand, within Atu5201
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 195,734 - Atu5199 0.46 -0.0 195,969 + Atu5199 0.67 +0.8 195,974 + Atu5199 0.67 +0.2 196,026 - Atu5199 0.72 -0.5 196,043 + Atu5199 0.74 +0.5 196,156 + Atu5199 0.84 -0.4 196,156 + Atu5199 0.84 +0.0 196,156 + Atu5199 0.84 -0.8 196,162 - Atu5199 0.84 +0.4 196,164 - Atu5199 0.85 +0.2 196,164 - Atu5199 0.85 +1.6 196,164 - Atu5199 0.85 -2.3 196,164 - Atu5199 0.85 +0.4 196,164 - Atu5199 0.85 +0.4 196,264 + -0.9 196,295 + +1.3 196,303 - -0.6 196,340 + +0.1 196,379 - -1.6 196,445 + +1.0 196,453 - +0.3 196,603 + -0.8 196,617 + -2.4 196,659 - -4.2 196,659 - +0.6 196,792 + -0.6 196,832 + -1.1 196,832 + -1.8 196,852 + Atu5200 0.11 -1.3 196,853 - Atu5200 0.11 -0.3 196,860 + Atu5200 0.12 -0.2 196,905 + Atu5200 0.15 +0.5 196,905 + Atu5200 0.15 +3.0 196,934 + Atu5200 0.17 -1.6 196,946 + Atu5200 0.18 -1.0 196,983 - Atu5200 0.21 -3.3 197,126 + Atu5200 0.31 -0.1 197,134 - Atu5200 0.32 +0.0 197,134 - Atu5200 0.32 +0.7 197,134 - Atu5200 0.32 +0.7 197,134 - Atu5200 0.32 +0.4 197,134 - Atu5200 0.32 +0.2 197,144 - Atu5200 0.33 +1.2 197,167 - Atu5200 0.34 -1.2 197,266 - Atu5200 0.42 +1.6 197,276 + Atu5200 0.42 +0.7 197,276 + Atu5200 0.42 +2.6 197,303 + Atu5200 0.44 +0.2 197,380 + Atu5200 0.50 +0.4 197,429 - Atu5200 0.54 -1.2 197,436 - Atu5200 0.54 -0.1 197,655 - Atu5200 0.70 +1.0 197,669 - Atu5200 0.71 +1.1 197,680 - Atu5200 0.72 +1.6 197,765 + Atu5200 0.78 +1.2 197,784 + Atu5200 0.80 -0.9 197,792 - Atu5200 0.80 +0.6 197,792 - Atu5200 0.80 +0.3 197,893 + Atu5200 0.88 -0.2 197,954 + +0.4 197,988 - +0.5 197,997 + -0.2 198,015 + -2.5 198,087 - +1.8 198,216 + -0.3 198,223 + -1.0 198,239 - -1.9 198,277 + -0.1 198,285 - -0.1 198,285 - +0.4 198,296 + -0.8 198,304 - -0.3 198,345 + +1.0 198,369 + -0.6 198,486 + Atu5201 0.18 -1.6 198,500 + Atu5201 0.20 +1.2 198,507 - Atu5201 0.21 +0.4 198,514 - Atu5201 0.22 -1.9 198,518 + Atu5201 0.22 +0.6 198,526 + Atu5201 0.23 +1.1 198,534 - Atu5201 0.24 +0.2 198,534 - Atu5201 0.24 -0.6 198,534 - Atu5201 0.24 -0.3 198,570 + Atu5201 0.28 -0.1 198,583 - Atu5201 0.30 +0.1 198,648 + Atu5201 0.37 -3.4 198,667 - Atu5201 0.39 +0.0 198,680 + Atu5201 0.41 -1.3 198,684 + Atu5201 0.41 +0.8 198,702 + Atu5201 0.44 +0.1 198,746 - Atu5201 0.49 -0.1 198,873 + Atu5201 0.64 -0.6 198,881 - Atu5201 0.64 +1.5 198,928 - Atu5201 0.70 +1.0 198,944 + Atu5201 0.72 +0.1 198,966 + Atu5201 0.74 +0.6 199,000 + Atu5201 0.78 -1.1 199,000 - Atu5201 0.78 -2.2 199,022 + Atu5201 0.81 -0.9 199,030 - Atu5201 0.82 +1.1
Or see this region's nucleotide sequence