Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3840 and Atu3841 overlap by 2 nucleotides Atu3841 and Atu3842 overlap by 20 nucleotides Atu3842 and Atu3843 are separated by 342 nucleotides
Atu3840: Atu3840 - hypothetical protein, at 935,740 to 936,048
Atu3840
Atu3841: Atu3841 - hypothetical protein, at 936,047 to 936,523
Atu3841
Atu3842: Atu3842 - hypothetical protein, at 936,504 to 937,094
Atu3842
Atu3843: Atu3843 - hypothetical protein, at 937,437 to 938,579
Atu3843
Position (kb) 936
937
938 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 935.512 kb on + strand at 935.520 kb on - strand at 935.526 kb on - strand at 935.526 kb on - strand at 935.561 kb on + strand at 935.577 kb on + strand at 935.593 kb on - strand at 935.603 kb on - strand at 935.611 kb on - strand at 935.670 kb on + strand at 935.745 kb on - strand at 935.798 kb on - strand, within Atu3840 at 935.816 kb on - strand, within Atu3840 at 935.816 kb on - strand, within Atu3840 at 935.822 kb on + strand, within Atu3840 at 935.828 kb on + strand, within Atu3840 at 935.860 kb on + strand, within Atu3840 at 935.860 kb on + strand, within Atu3840 at 935.880 kb on + strand, within Atu3840 at 935.880 kb on + strand, within Atu3840 at 935.880 kb on + strand, within Atu3840 at 935.880 kb on + strand, within Atu3840 at 935.880 kb on + strand, within Atu3840 at 935.888 kb on - strand, within Atu3840 at 935.888 kb on - strand, within Atu3840 at 935.979 kb on + strand, within Atu3840 at 935.986 kb on + strand, within Atu3840 at 935.994 kb on - strand, within Atu3840 at 936.025 kb on + strand at 936.025 kb on + strand at 936.037 kb on + strand at 936.042 kb on + strand at 936.045 kb on - strand at 936.068 kb on - strand at 936.096 kb on - strand, within Atu3841 at 936.148 kb on + strand, within Atu3841 at 936.148 kb on + strand, within Atu3841 at 936.165 kb on + strand, within Atu3841 at 936.253 kb on - strand, within Atu3841 at 936.308 kb on + strand, within Atu3841 at 936.312 kb on - strand, within Atu3841 at 936.312 kb on - strand, within Atu3841 at 936.316 kb on + strand, within Atu3841 at 936.318 kb on + strand, within Atu3841 at 936.326 kb on - strand, within Atu3841 at 936.326 kb on - strand, within Atu3841 at 936.326 kb on - strand, within Atu3841 at 936.338 kb on + strand, within Atu3841 at 936.338 kb on + strand, within Atu3841 at 936.346 kb on - strand, within Atu3841 at 936.346 kb on - strand, within Atu3841 at 936.419 kb on - strand, within Atu3841 at 936.506 kb on + strand at 936.507 kb on + strand at 936.594 kb on - strand, within Atu3842 at 936.594 kb on - strand, within Atu3842 at 936.594 kb on - strand, within Atu3842 at 936.623 kb on - strand, within Atu3842 at 936.768 kb on + strand, within Atu3842 at 936.790 kb on - strand, within Atu3842 at 936.861 kb on + strand, within Atu3842 at 936.864 kb on - strand, within Atu3842 at 936.926 kb on - strand, within Atu3842 at 936.988 kb on + strand, within Atu3842 at 936.993 kb on + strand, within Atu3842 at 937.001 kb on - strand, within Atu3842 at 937.063 kb on + strand at 937.089 kb on - strand at 937.105 kb on + strand at 937.148 kb on - strand at 937.148 kb on - strand at 937.160 kb on + strand at 937.170 kb on + strand at 937.237 kb on + strand at 937.256 kb on + strand at 937.256 kb on + strand at 937.256 kb on + strand at 937.256 kb on + strand at 937.256 kb on + strand at 937.264 kb on - strand at 937.264 kb on - strand at 937.573 kb on + strand, within Atu3843 at 937.608 kb on - strand, within Atu3843 at 937.610 kb on + strand, within Atu3843 at 937.623 kb on - strand, within Atu3843 at 937.631 kb on + strand, within Atu3843 at 937.639 kb on - strand, within Atu3843 at 937.639 kb on - strand, within Atu3843 at 937.649 kb on - strand, within Atu3843 at 937.652 kb on + strand, within Atu3843 at 937.652 kb on + strand, within Atu3843 at 937.652 kb on + strand, within Atu3843 at 937.659 kb on + strand, within Atu3843 at 937.660 kb on - strand, within Atu3843 at 937.683 kb on - strand, within Atu3843 at 937.685 kb on - strand, within Atu3843 at 937.693 kb on + strand, within Atu3843 at 937.693 kb on + strand, within Atu3843 at 937.695 kb on + strand, within Atu3843 at 937.701 kb on - strand, within Atu3843 at 937.721 kb on + strand, within Atu3843 at 937.721 kb on + strand, within Atu3843 at 937.721 kb on + strand, within Atu3843 at 937.721 kb on + strand, within Atu3843 at 937.721 kb on + strand, within Atu3843 at 937.729 kb on - strand, within Atu3843 at 937.729 kb on - strand, within Atu3843 at 937.734 kb on - strand, within Atu3843 at 937.745 kb on - strand, within Atu3843 at 937.824 kb on - strand, within Atu3843 at 937.855 kb on + strand, within Atu3843 at 937.881 kb on - strand, within Atu3843 at 937.971 kb on - strand, within Atu3843 at 937.971 kb on - strand, within Atu3843 at 937.989 kb on + strand, within Atu3843 at 937.997 kb on - strand, within Atu3843 at 938.034 kb on - strand, within Atu3843 at 938.039 kb on + strand, within Atu3843 at 938.047 kb on - strand, within Atu3843 at 938.047 kb on - strand, within Atu3843
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 935,512 + -3.5 935,520 - +1.0 935,526 - -0.3 935,526 - +0.8 935,561 + -0.1 935,577 + +0.2 935,593 - +0.6 935,603 - -1.0 935,611 - -0.9 935,670 + -0.6 935,745 - -2.3 935,798 - Atu3840 0.19 +0.8 935,816 - Atu3840 0.25 -0.0 935,816 - Atu3840 0.25 -0.6 935,822 + Atu3840 0.27 -1.3 935,828 + Atu3840 0.28 -0.2 935,860 + Atu3840 0.39 +4.0 935,860 + Atu3840 0.39 +0.3 935,880 + Atu3840 0.45 -0.0 935,880 + Atu3840 0.45 +0.9 935,880 + Atu3840 0.45 +2.0 935,880 + Atu3840 0.45 +1.7 935,880 + Atu3840 0.45 -0.4 935,888 - Atu3840 0.48 -0.4 935,888 - Atu3840 0.48 -2.0 935,979 + Atu3840 0.77 -1.8 935,986 + Atu3840 0.80 -0.5 935,994 - Atu3840 0.82 -1.4 936,025 + -0.9 936,025 + +0.3 936,037 + -0.2 936,042 + +0.3 936,045 - +0.0 936,068 - +0.5 936,096 - Atu3841 0.10 +1.5 936,148 + Atu3841 0.21 -0.8 936,148 + Atu3841 0.21 +1.2 936,165 + Atu3841 0.25 +2.0 936,253 - Atu3841 0.43 +0.3 936,308 + Atu3841 0.55 +1.6 936,312 - Atu3841 0.56 +2.2 936,312 - Atu3841 0.56 +0.1 936,316 + Atu3841 0.56 +1.6 936,318 + Atu3841 0.57 +0.8 936,326 - Atu3841 0.58 -0.2 936,326 - Atu3841 0.58 -1.5 936,326 - Atu3841 0.58 +1.8 936,338 + Atu3841 0.61 +1.1 936,338 + Atu3841 0.61 +1.2 936,346 - Atu3841 0.63 +2.1 936,346 - Atu3841 0.63 -1.6 936,419 - Atu3841 0.78 -0.3 936,506 + -2.0 936,507 + -0.8 936,594 - Atu3842 0.15 +1.7 936,594 - Atu3842 0.15 -0.3 936,594 - Atu3842 0.15 -0.1 936,623 - Atu3842 0.20 +0.5 936,768 + Atu3842 0.45 +0.5 936,790 - Atu3842 0.48 +0.4 936,861 + Atu3842 0.60 +1.1 936,864 - Atu3842 0.61 -0.4 936,926 - Atu3842 0.71 -0.4 936,988 + Atu3842 0.82 -0.7 936,993 + Atu3842 0.83 -0.1 937,001 - Atu3842 0.84 -0.7 937,063 + -0.2 937,089 - -1.1 937,105 + -0.3 937,148 - -2.1 937,148 - +1.3 937,160 + +1.2 937,170 + +0.8 937,237 + -0.7 937,256 + +0.1 937,256 + -3.2 937,256 + -0.3 937,256 + -0.7 937,256 + -2.7 937,264 - -0.8 937,264 - +0.8 937,573 + Atu3843 0.12 -0.7 937,608 - Atu3843 0.15 +0.9 937,610 + Atu3843 0.15 +0.6 937,623 - Atu3843 0.16 -1.8 937,631 + Atu3843 0.17 +1.6 937,639 - Atu3843 0.18 -0.3 937,639 - Atu3843 0.18 +1.2 937,649 - Atu3843 0.19 -0.0 937,652 + Atu3843 0.19 +1.2 937,652 + Atu3843 0.19 +0.6 937,652 + Atu3843 0.19 -1.1 937,659 + Atu3843 0.19 -0.2 937,660 - Atu3843 0.20 +0.8 937,683 - Atu3843 0.22 -2.5 937,685 - Atu3843 0.22 -0.5 937,693 + Atu3843 0.22 -0.2 937,693 + Atu3843 0.22 +0.6 937,695 + Atu3843 0.23 -0.7 937,701 - Atu3843 0.23 -0.1 937,721 + Atu3843 0.25 -1.8 937,721 + Atu3843 0.25 +0.3 937,721 + Atu3843 0.25 -0.0 937,721 + Atu3843 0.25 +0.4 937,721 + Atu3843 0.25 -2.2 937,729 - Atu3843 0.26 -0.4 937,729 - Atu3843 0.26 -0.1 937,734 - Atu3843 0.26 +0.4 937,745 - Atu3843 0.27 +0.4 937,824 - Atu3843 0.34 +1.0 937,855 + Atu3843 0.37 +0.8 937,881 - Atu3843 0.39 -1.1 937,971 - Atu3843 0.47 +0.6 937,971 - Atu3843 0.47 +0.5 937,989 + Atu3843 0.48 -1.4 937,997 - Atu3843 0.49 +0.2 938,034 - Atu3843 0.52 +0.3 938,039 + Atu3843 0.53 +1.0 938,047 - Atu3843 0.53 -0.2 938,047 - Atu3843 0.53 +0.3
Or see this region's nucleotide sequence