Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3666 and Atu3667 are separated by 54 nucleotides Atu3667 and Atu3668 are separated by 31 nucleotides Atu3668 and Atu3669 are separated by 114 nucleotides
Atu3666: Atu3666 - hypothetical protein, at 715,046 to 715,504
Atu3666
Atu3667: Atu3667 - aspartate alpha-decarboxylase, at 715,559 to 716,026
Atu3667
Atu3668: Atu3668 - siderophore biosynthesis protein, at 716,058 to 716,579
Atu3668
Atu3669: Atu3669 - siderophore biosynthesis protein, at 716,694 to 718,055
Atu3669
Position (kb) 716
717 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 715.067 kb on - strand at 715.133 kb on - strand, within Atu3666 at 715.151 kb on - strand, within Atu3666 at 715.151 kb on - strand, within Atu3666 at 715.151 kb on - strand, within Atu3666 at 715.210 kb on + strand, within Atu3666 at 715.215 kb on + strand, within Atu3666 at 715.292 kb on - strand, within Atu3666 at 715.489 kb on - strand at 715.507 kb on - strand at 715.650 kb on + strand, within Atu3667 at 715.749 kb on + strand, within Atu3667 at 715.849 kb on + strand, within Atu3667 at 715.876 kb on - strand, within Atu3667 at 715.883 kb on - strand, within Atu3667 at 715.996 kb on + strand at 716.001 kb on + strand at 716.001 kb on + strand at 716.150 kb on + strand, within Atu3668 at 716.355 kb on - strand, within Atu3668 at 716.458 kb on - strand, within Atu3668 at 716.517 kb on - strand, within Atu3668 at 716.612 kb on - strand at 716.638 kb on + strand at 716.646 kb on - strand at 716.646 kb on - strand at 716.714 kb on - strand at 716.716 kb on - strand at 716.738 kb on + strand at 716.770 kb on - strand at 716.770 kb on - strand at 716.770 kb on - strand at 716.781 kb on + strand at 716.788 kb on - strand at 716.789 kb on - strand at 716.837 kb on + strand, within Atu3669 at 716.845 kb on + strand, within Atu3669 at 716.981 kb on - strand, within Atu3669 at 717.036 kb on + strand, within Atu3669 at 717.039 kb on - strand, within Atu3669 at 717.039 kb on - strand, within Atu3669 at 717.039 kb on - strand, within Atu3669 at 717.148 kb on + strand, within Atu3669 at 717.208 kb on - strand, within Atu3669 at 717.216 kb on + strand, within Atu3669 at 717.269 kb on + strand, within Atu3669 at 717.321 kb on + strand, within Atu3669 at 717.334 kb on + strand, within Atu3669 at 717.342 kb on - strand, within Atu3669 at 717.342 kb on - strand, within Atu3669 at 717.443 kb on + strand, within Atu3669 at 717.535 kb on - strand, within Atu3669 at 717.554 kb on - strand, within Atu3669 at 717.560 kb on + strand, within Atu3669
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 715,067 - -0.7 715,133 - Atu3666 0.19 -0.0 715,151 - Atu3666 0.23 +0.5 715,151 - Atu3666 0.23 -1.0 715,151 - Atu3666 0.23 +0.4 715,210 + Atu3666 0.36 +1.2 715,215 + Atu3666 0.37 -1.2 715,292 - Atu3666 0.54 -4.3 715,489 - +0.6 715,507 - -1.8 715,650 + Atu3667 0.19 -1.2 715,749 + Atu3667 0.41 -3.9 715,849 + Atu3667 0.62 -0.2 715,876 - Atu3667 0.68 +1.5 715,883 - Atu3667 0.69 -0.6 715,996 + -0.7 716,001 + -2.2 716,001 + -0.9 716,150 + Atu3668 0.18 +0.5 716,355 - Atu3668 0.57 -0.1 716,458 - Atu3668 0.77 -1.1 716,517 - Atu3668 0.88 -3.3 716,612 - +0.2 716,638 + -0.6 716,646 - +0.0 716,646 - -1.9 716,714 - +0.6 716,716 - -0.8 716,738 + -1.6 716,770 - -0.8 716,770 - -4.1 716,770 - +1.5 716,781 + +0.1 716,788 - +0.7 716,789 - -1.4 716,837 + Atu3669 0.10 -2.4 716,845 + Atu3669 0.11 +0.9 716,981 - Atu3669 0.21 +0.4 717,036 + Atu3669 0.25 +0.4 717,039 - Atu3669 0.25 -2.9 717,039 - Atu3669 0.25 -0.1 717,039 - Atu3669 0.25 -0.6 717,148 + Atu3669 0.33 +0.9 717,208 - Atu3669 0.38 +0.0 717,216 + Atu3669 0.38 +0.1 717,269 + Atu3669 0.42 -1.7 717,321 + Atu3669 0.46 +0.4 717,334 + Atu3669 0.47 -1.7 717,342 - Atu3669 0.48 +0.2 717,342 - Atu3669 0.48 -1.5 717,443 + Atu3669 0.55 -0.8 717,535 - Atu3669 0.62 -0.8 717,554 - Atu3669 0.63 -0.0 717,560 + Atu3669 0.64 -0.1
Or see this region's nucleotide sequence