Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3558 and Atu3559 are separated by 54 nucleotides Atu3559 and Atu3560 are separated by 52 nucleotides
Atu3558: Atu3558 - glycosyltransferase, at 611,436 to 612,650
Atu3558
Atu3559: Atu3559 - glycosyltransferase, at 612,705 to 613,799
Atu3559
Atu3560: Atu3560 - glycosyltransferase, at 613,852 to 615,000
Atu3560
Position (kb) 612
613
614 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 611.753 kb on + strand, within Atu3558 at 611.895 kb on + strand, within Atu3558 at 612.076 kb on + strand, within Atu3558 at 612.083 kb on + strand, within Atu3558 at 612.083 kb on + strand, within Atu3558 at 612.084 kb on - strand, within Atu3558 at 612.125 kb on + strand, within Atu3558 at 612.216 kb on - strand, within Atu3558 at 612.218 kb on + strand, within Atu3558 at 612.293 kb on + strand, within Atu3558 at 612.479 kb on + strand, within Atu3558 at 612.517 kb on - strand, within Atu3558 at 612.617 kb on + strand at 612.627 kb on - strand at 612.627 kb on - strand at 612.627 kb on - strand at 612.644 kb on + strand at 612.652 kb on - strand at 612.664 kb on - strand at 612.669 kb on - strand at 612.728 kb on + strand at 612.735 kb on + strand at 612.979 kb on - strand, within Atu3559 at 612.995 kb on + strand, within Atu3559 at 613.008 kb on + strand, within Atu3559 at 613.129 kb on + strand, within Atu3559 at 613.131 kb on + strand, within Atu3559 at 613.137 kb on - strand, within Atu3559 at 613.227 kb on - strand, within Atu3559 at 613.363 kb on + strand, within Atu3559 at 613.384 kb on + strand, within Atu3559 at 613.439 kb on + strand, within Atu3559 at 613.469 kb on + strand, within Atu3559 at 613.519 kb on + strand, within Atu3559 at 613.527 kb on - strand, within Atu3559 at 613.544 kb on + strand, within Atu3559 at 613.565 kb on + strand, within Atu3559 at 613.685 kb on + strand, within Atu3559 at 613.685 kb on + strand, within Atu3559 at 613.685 kb on + strand, within Atu3559 at 613.727 kb on + strand at 613.727 kb on + strand at 613.938 kb on + strand at 613.946 kb on - strand at 613.946 kb on - strand at 613.969 kb on - strand, within Atu3560 at 614.119 kb on + strand, within Atu3560 at 614.192 kb on - strand, within Atu3560 at 614.256 kb on + strand, within Atu3560 at 614.366 kb on + strand, within Atu3560 at 614.487 kb on - strand, within Atu3560 at 614.799 kb on + strand, within Atu3560
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 611,753 + Atu3558 0.26 -2.6 611,895 + Atu3558 0.38 -0.8 612,076 + Atu3558 0.53 +2.0 612,083 + Atu3558 0.53 +0.3 612,083 + Atu3558 0.53 -2.2 612,084 - Atu3558 0.53 +1.5 612,125 + Atu3558 0.57 -0.4 612,216 - Atu3558 0.64 +0.1 612,218 + Atu3558 0.64 +0.0 612,293 + Atu3558 0.71 -3.9 612,479 + Atu3558 0.86 -1.5 612,517 - Atu3558 0.89 -0.5 612,617 + +1.0 612,627 - +0.1 612,627 - -0.3 612,627 - +0.4 612,644 + +0.2 612,652 - -1.5 612,664 - +0.3 612,669 - -2.8 612,728 + -0.8 612,735 + -1.1 612,979 - Atu3559 0.25 +0.0 612,995 + Atu3559 0.26 -0.6 613,008 + Atu3559 0.28 +0.5 613,129 + Atu3559 0.39 -0.2 613,131 + Atu3559 0.39 -2.1 613,137 - Atu3559 0.39 +0.5 613,227 - Atu3559 0.48 -0.4 613,363 + Atu3559 0.60 -0.7 613,384 + Atu3559 0.62 +0.8 613,439 + Atu3559 0.67 +3.1 613,469 + Atu3559 0.70 +0.2 613,519 + Atu3559 0.74 -0.1 613,527 - Atu3559 0.75 -0.7 613,544 + Atu3559 0.77 -1.8 613,565 + Atu3559 0.79 -0.5 613,685 + Atu3559 0.89 +0.7 613,685 + Atu3559 0.89 +0.1 613,685 + Atu3559 0.89 -1.3 613,727 + -1.1 613,727 + +0.8 613,938 + -0.3 613,946 - -0.1 613,946 - +0.3 613,969 - Atu3560 0.10 -1.0 614,119 + Atu3560 0.23 -0.3 614,192 - Atu3560 0.30 +0.2 614,256 + Atu3560 0.35 -0.3 614,366 + Atu3560 0.45 +1.0 614,487 - Atu3560 0.55 -1.5 614,799 + Atu3560 0.82 -1.5
Or see this region's nucleotide sequence