Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3530 and Atu3531 are separated by 17 nucleotides Atu3531 and Atu3532 are separated by 22 nucleotides Atu3532 and Atu3533 are separated by 151 nucleotides
Atu3530: Atu3530 - mannitol dehydrogenase, at 579,312 to 580,784
Atu3530
Atu3531: Atu3531 - 3-oxoacyl-ACP reductase, at 580,802 to 581,542
Atu3531
Atu3532: Atu3532 - GntR family transcriptional regulator, at 581,565 to 582,314
Atu3532
Atu3533: Atu3533 - sugar ABC transporter substrate-binding protein, at 582,466 to 583,506
Atu3533
Position (kb) 580
581
582 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 579.826 kb on - strand, within Atu3530 at 579.858 kb on - strand, within Atu3530 at 579.906 kb on - strand, within Atu3530 at 580.040 kb on - strand, within Atu3530 at 580.052 kb on - strand, within Atu3530 at 580.196 kb on + strand, within Atu3530 at 580.204 kb on - strand, within Atu3530 at 580.231 kb on + strand, within Atu3530 at 580.247 kb on + strand, within Atu3530 at 580.257 kb on - strand, within Atu3530 at 580.389 kb on - strand, within Atu3530 at 580.422 kb on - strand, within Atu3530 at 580.446 kb on - strand, within Atu3530 at 580.551 kb on - strand, within Atu3530 at 580.574 kb on + strand, within Atu3530 at 580.574 kb on + strand, within Atu3530 at 580.641 kb on + strand at 580.715 kb on + strand at 581.049 kb on + strand, within Atu3531 at 581.099 kb on - strand, within Atu3531 at 581.179 kb on - strand, within Atu3531 at 581.231 kb on + strand, within Atu3531 at 581.239 kb on - strand, within Atu3531 at 581.273 kb on - strand, within Atu3531 at 581.330 kb on + strand, within Atu3531 at 581.373 kb on - strand, within Atu3531 at 581.536 kb on + strand at 581.550 kb on + strand at 581.625 kb on + strand at 581.680 kb on - strand, within Atu3532 at 581.691 kb on + strand, within Atu3532 at 581.889 kb on - strand, within Atu3532 at 581.919 kb on - strand, within Atu3532 at 582.015 kb on - strand, within Atu3532 at 582.093 kb on - strand, within Atu3532 at 582.162 kb on + strand, within Atu3532 at 582.198 kb on - strand, within Atu3532 at 582.212 kb on + strand, within Atu3532 at 582.220 kb on - strand, within Atu3532 at 582.274 kb on - strand at 582.284 kb on + strand at 582.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 579,826 - Atu3530 0.35 -1.1 579,858 - Atu3530 0.37 +0.4 579,906 - Atu3530 0.40 +0.4 580,040 - Atu3530 0.49 -0.0 580,052 - Atu3530 0.50 -0.3 580,196 + Atu3530 0.60 -1.3 580,204 - Atu3530 0.61 +0.7 580,231 + Atu3530 0.62 -3.1 580,247 + Atu3530 0.63 -1.8 580,257 - Atu3530 0.64 -0.1 580,389 - Atu3530 0.73 -1.5 580,422 - Atu3530 0.75 -2.0 580,446 - Atu3530 0.77 -3.9 580,551 - Atu3530 0.84 -0.4 580,574 + Atu3530 0.86 -0.7 580,574 + Atu3530 0.86 -0.7 580,641 + +1.1 580,715 + +0.4 581,049 + Atu3531 0.33 -0.4 581,099 - Atu3531 0.40 -0.2 581,179 - Atu3531 0.51 +1.7 581,231 + Atu3531 0.58 +1.0 581,239 - Atu3531 0.59 -0.5 581,273 - Atu3531 0.64 -2.7 581,330 + Atu3531 0.71 -0.4 581,373 - Atu3531 0.77 -0.8 581,536 + +0.7 581,550 + -2.2 581,625 + +2.2 581,680 - Atu3532 0.15 -1.3 581,691 + Atu3532 0.17 -0.9 581,889 - Atu3532 0.43 +0.8 581,919 - Atu3532 0.47 +0.9 582,015 - Atu3532 0.60 -0.2 582,093 - Atu3532 0.70 -1.4 582,162 + Atu3532 0.80 +0.5 582,198 - Atu3532 0.84 -2.0 582,212 + Atu3532 0.86 -1.2 582,220 - Atu3532 0.87 -0.7 582,274 - -1.0 582,284 + -0.3 582,405 - -0.4
Or see this region's nucleotide sequence