Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3407 and Atu3408 are separated by 124 nucleotides Atu3408 and Atu3409 are separated by 93 nucleotides
Atu3407: Atu3407 - hypothetical protein, at 452,350 to 453,723
Atu3407
Atu3408: Atu3408 - 2-haloalkanoic acid dehalogenase, at 453,848 to 454,693
Atu3408
Atu3409: Atu3409 - oligopeptide ABC transporter substrate-binding protein, at 454,787 to 456,397
Atu3409
Position (kb) 453
454
455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 452.859 kb on - strand, within Atu3407 at 452.859 kb on - strand, within Atu3407 at 452.863 kb on + strand, within Atu3407 at 452.970 kb on + strand, within Atu3407 at 452.972 kb on - strand, within Atu3407 at 453.060 kb on + strand, within Atu3407 at 453.068 kb on - strand, within Atu3407 at 453.068 kb on - strand, within Atu3407 at 453.089 kb on - strand, within Atu3407 at 453.148 kb on + strand, within Atu3407 at 453.148 kb on + strand, within Atu3407 at 453.156 kb on - strand, within Atu3407 at 453.156 kb on - strand, within Atu3407 at 453.245 kb on - strand, within Atu3407 at 453.261 kb on - strand, within Atu3407 at 453.309 kb on - strand, within Atu3407 at 453.341 kb on + strand, within Atu3407 at 453.424 kb on - strand, within Atu3407 at 453.572 kb on + strand, within Atu3407 at 453.616 kb on + strand at 453.624 kb on + strand at 453.669 kb on + strand at 453.674 kb on - strand at 453.693 kb on + strand at 453.696 kb on - strand at 453.712 kb on + strand at 453.712 kb on + strand at 453.712 kb on + strand at 453.712 kb on + strand at 453.772 kb on + strand at 454.032 kb on - strand, within Atu3408 at 454.061 kb on - strand, within Atu3408 at 454.073 kb on - strand, within Atu3408 at 454.075 kb on + strand, within Atu3408 at 454.093 kb on - strand, within Atu3408 at 454.126 kb on + strand, within Atu3408 at 454.134 kb on - strand, within Atu3408 at 454.182 kb on + strand, within Atu3408 at 454.187 kb on + strand, within Atu3408 at 454.306 kb on + strand, within Atu3408 at 454.314 kb on + strand, within Atu3408 at 454.336 kb on - strand, within Atu3408 at 454.489 kb on - strand, within Atu3408 at 454.546 kb on + strand, within Atu3408 at 454.591 kb on - strand, within Atu3408 at 454.600 kb on - strand, within Atu3408 at 454.785 kb on - strand at 454.813 kb on - strand at 454.848 kb on - strand at 454.896 kb on + strand at 454.924 kb on + strand at 455.045 kb on + strand, within Atu3409 at 455.167 kb on - strand, within Atu3409 at 455.233 kb on + strand, within Atu3409 at 455.256 kb on + strand, within Atu3409 at 455.256 kb on + strand, within Atu3409 at 455.407 kb on - strand, within Atu3409 at 455.410 kb on + strand, within Atu3409 at 455.508 kb on - strand, within Atu3409 at 455.513 kb on + strand, within Atu3409 at 455.523 kb on + strand, within Atu3409 at 455.531 kb on - strand, within Atu3409 at 455.616 kb on + strand, within Atu3409 at 455.616 kb on + strand, within Atu3409 at 455.624 kb on - strand, within Atu3409
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 452,859 - Atu3407 0.37 -1.8 452,859 - Atu3407 0.37 -1.0 452,863 + Atu3407 0.37 -0.6 452,970 + Atu3407 0.45 -0.3 452,972 - Atu3407 0.45 -0.7 453,060 + Atu3407 0.52 +1.0 453,068 - Atu3407 0.52 -0.8 453,068 - Atu3407 0.52 -0.7 453,089 - Atu3407 0.54 +0.1 453,148 + Atu3407 0.58 -2.4 453,148 + Atu3407 0.58 -2.4 453,156 - Atu3407 0.59 -0.8 453,156 - Atu3407 0.59 -2.8 453,245 - Atu3407 0.65 +1.1 453,261 - Atu3407 0.66 +0.9 453,309 - Atu3407 0.70 -0.9 453,341 + Atu3407 0.72 +0.7 453,424 - Atu3407 0.78 -1.0 453,572 + Atu3407 0.89 +0.4 453,616 + -1.2 453,624 + +0.0 453,669 + +0.6 453,674 - -0.0 453,693 + +1.6 453,696 - +0.4 453,712 + +0.5 453,712 + -0.4 453,712 + -0.1 453,712 + -0.3 453,772 + -1.0 454,032 - Atu3408 0.22 -0.3 454,061 - Atu3408 0.25 -0.3 454,073 - Atu3408 0.27 -1.6 454,075 + Atu3408 0.27 +0.9 454,093 - Atu3408 0.29 -1.1 454,126 + Atu3408 0.33 -2.8 454,134 - Atu3408 0.34 +0.8 454,182 + Atu3408 0.39 +0.0 454,187 + Atu3408 0.40 +0.1 454,306 + Atu3408 0.54 -0.1 454,314 + Atu3408 0.55 -0.8 454,336 - Atu3408 0.58 -2.7 454,489 - Atu3408 0.76 -1.1 454,546 + Atu3408 0.83 +0.3 454,591 - Atu3408 0.88 +0.1 454,600 - Atu3408 0.89 -0.5 454,785 - -0.2 454,813 - +0.6 454,848 - -0.6 454,896 + +0.7 454,924 + +1.1 455,045 + Atu3409 0.16 -2.9 455,167 - Atu3409 0.24 +0.6 455,233 + Atu3409 0.28 +0.4 455,256 + Atu3409 0.29 -0.4 455,256 + Atu3409 0.29 +0.2 455,407 - Atu3409 0.38 +2.1 455,410 + Atu3409 0.39 -0.7 455,508 - Atu3409 0.45 +1.1 455,513 + Atu3409 0.45 -0.2 455,523 + Atu3409 0.46 +0.2 455,531 - Atu3409 0.46 +0.2 455,616 + Atu3409 0.51 -0.0 455,616 + Atu3409 0.51 +1.5 455,624 - Atu3409 0.52 -0.8
Or see this region's nucleotide sequence