Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3397 and Atu3398 are separated by 202 nucleotides Atu3398 and Atu3399 are separated by 22 nucleotides Atu3399 and Atu3400 are separated by 28 nucleotides
Atu3397: Atu3397 - hypothetical protein, at 441,410 to 442,285
Atu3397
Atu3398: Atu3398 - acetylornithine deacetylase, at 442,488 to 443,612
Atu3398
Atu3399: Atu3399 - 2-hydroxyacid dehydrogenase, at 443,635 to 444,558
Atu3399
Atu3400: Atu3400 - hypothetical protein, at 444,587 to 444,943
Atu3400
Position (kb) 442
443
444 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 441.565 kb on - strand, within Atu3397 at 441.571 kb on + strand, within Atu3397 at 441.708 kb on + strand, within Atu3397 at 441.726 kb on - strand, within Atu3397 at 441.729 kb on + strand, within Atu3397 at 441.788 kb on + strand, within Atu3397 at 441.796 kb on - strand, within Atu3397 at 441.796 kb on - strand, within Atu3397 at 441.860 kb on - strand, within Atu3397 at 441.919 kb on + strand, within Atu3397 at 441.926 kb on - strand, within Atu3397 at 441.965 kb on - strand, within Atu3397 at 442.050 kb on - strand, within Atu3397 at 442.093 kb on - strand, within Atu3397 at 442.161 kb on - strand, within Atu3397 at 442.190 kb on + strand, within Atu3397 at 442.269 kb on + strand at 442.277 kb on - strand at 442.294 kb on + strand at 442.302 kb on - strand at 442.327 kb on + strand at 442.396 kb on + strand at 442.424 kb on + strand at 442.442 kb on - strand at 442.552 kb on - strand at 442.588 kb on + strand at 442.594 kb on + strand at 442.619 kb on + strand, within Atu3398 at 442.674 kb on + strand, within Atu3398 at 442.714 kb on - strand, within Atu3398 at 442.729 kb on + strand, within Atu3398 at 442.729 kb on + strand, within Atu3398 at 442.820 kb on - strand, within Atu3398 at 442.853 kb on - strand, within Atu3398 at 442.918 kb on - strand, within Atu3398 at 442.935 kb on - strand, within Atu3398 at 442.980 kb on - strand, within Atu3398 at 443.155 kb on + strand, within Atu3398 at 443.165 kb on + strand, within Atu3398 at 443.165 kb on + strand, within Atu3398 at 443.178 kb on - strand, within Atu3398 at 443.197 kb on + strand, within Atu3398 at 443.285 kb on + strand, within Atu3398 at 443.285 kb on + strand, within Atu3398 at 443.305 kb on + strand, within Atu3398 at 443.410 kb on - strand, within Atu3398 at 443.602 kb on + strand at 443.605 kb on - strand at 443.607 kb on + strand at 443.615 kb on - strand at 443.615 kb on - strand at 443.615 kb on - strand at 443.761 kb on + strand, within Atu3399 at 443.793 kb on - strand, within Atu3399 at 443.860 kb on + strand, within Atu3399 at 443.860 kb on + strand, within Atu3399 at 443.878 kb on + strand, within Atu3399 at 443.982 kb on + strand, within Atu3399 at 443.982 kb on + strand, within Atu3399 at 443.984 kb on + strand, within Atu3399 at 443.984 kb on + strand, within Atu3399 at 443.989 kb on + strand, within Atu3399 at 443.997 kb on - strand, within Atu3399 at 444.002 kb on - strand, within Atu3399 at 444.002 kb on - strand, within Atu3399 at 444.007 kb on + strand, within Atu3399 at 444.081 kb on + strand, within Atu3399 at 444.088 kb on + strand, within Atu3399 at 444.088 kb on - strand, within Atu3399 at 444.089 kb on - strand, within Atu3399 at 444.117 kb on - strand, within Atu3399 at 444.238 kb on + strand, within Atu3399 at 444.288 kb on - strand, within Atu3399 at 444.288 kb on - strand, within Atu3399 at 444.330 kb on - strand, within Atu3399 at 444.339 kb on + strand, within Atu3399 at 444.347 kb on - strand, within Atu3399 at 444.380 kb on + strand, within Atu3399 at 444.483 kb on - strand at 444.495 kb on + strand at 444.515 kb on + strand at 444.586 kb on - strand at 444.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 441,565 - Atu3397 0.18 -0.1 441,571 + Atu3397 0.18 +1.4 441,708 + Atu3397 0.34 +1.5 441,726 - Atu3397 0.36 +0.5 441,729 + Atu3397 0.36 +1.1 441,788 + Atu3397 0.43 -2.2 441,796 - Atu3397 0.44 -1.5 441,796 - Atu3397 0.44 -0.9 441,860 - Atu3397 0.51 -1.5 441,919 + Atu3397 0.58 +0.0 441,926 - Atu3397 0.59 -0.1 441,965 - Atu3397 0.63 +0.0 442,050 - Atu3397 0.73 +1.0 442,093 - Atu3397 0.78 +0.4 442,161 - Atu3397 0.86 +1.3 442,190 + Atu3397 0.89 -0.4 442,269 + -1.4 442,277 - -0.2 442,294 + -1.1 442,302 - -1.3 442,327 + +0.3 442,396 + +0.6 442,424 + +2.2 442,442 - -1.0 442,552 - +0.8 442,588 + -1.2 442,594 + +0.8 442,619 + Atu3398 0.12 +1.3 442,674 + Atu3398 0.17 +1.0 442,714 - Atu3398 0.20 +1.0 442,729 + Atu3398 0.21 -0.6 442,729 + Atu3398 0.21 -1.0 442,820 - Atu3398 0.30 -0.4 442,853 - Atu3398 0.32 +2.1 442,918 - Atu3398 0.38 -0.3 442,935 - Atu3398 0.40 -2.4 442,980 - Atu3398 0.44 -0.1 443,155 + Atu3398 0.59 +0.0 443,165 + Atu3398 0.60 -0.7 443,165 + Atu3398 0.60 +1.4 443,178 - Atu3398 0.61 -1.0 443,197 + Atu3398 0.63 -1.3 443,285 + Atu3398 0.71 -0.1 443,285 + Atu3398 0.71 +0.9 443,305 + Atu3398 0.73 +0.1 443,410 - Atu3398 0.82 -0.6 443,602 + +0.6 443,605 - +0.8 443,607 + +0.8 443,615 - +0.6 443,615 - +0.6 443,615 - -0.1 443,761 + Atu3399 0.14 +0.5 443,793 - Atu3399 0.17 +2.1 443,860 + Atu3399 0.24 -0.6 443,860 + Atu3399 0.24 +1.0 443,878 + Atu3399 0.26 +0.4 443,982 + Atu3399 0.38 -1.1 443,982 + Atu3399 0.38 -0.3 443,984 + Atu3399 0.38 -2.0 443,984 + Atu3399 0.38 +0.4 443,989 + Atu3399 0.38 +0.1 443,997 - Atu3399 0.39 -0.2 444,002 - Atu3399 0.40 +1.0 444,002 - Atu3399 0.40 -0.6 444,007 + Atu3399 0.40 -0.3 444,081 + Atu3399 0.48 +0.5 444,088 + Atu3399 0.49 -0.1 444,088 - Atu3399 0.49 -0.1 444,089 - Atu3399 0.49 +2.8 444,117 - Atu3399 0.52 -1.1 444,238 + Atu3399 0.65 -1.2 444,288 - Atu3399 0.71 -0.2 444,288 - Atu3399 0.71 +0.7 444,330 - Atu3399 0.75 -1.2 444,339 + Atu3399 0.76 -0.6 444,347 - Atu3399 0.77 +0.2 444,380 + Atu3399 0.81 +0.5 444,483 - -1.9 444,495 + +0.8 444,515 + -0.4 444,586 - -0.4 444,603 - -0.9
Or see this region's nucleotide sequence