Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3283 and Atu3284 are separated by 4 nucleotides Atu3284 and Atu3285 are separated by 11 nucleotides Atu3285 and Atu3286 are separated by 449 nucleotides
Atu3283: Atu3283 - sugar ABC transporter permease, at 308,758 to 309,684
Atu3283
Atu3284: Atu3284 - sugar ABC transporter permease, at 309,689 to 310,546
Atu3284
Atu3285: Atu3285 - alpha-glucosidase, at 310,558 to 312,552
Atu3285
Atu3286: Atu3286 - ABC transporter permease, at 313,002 to 313,787
Atu3286
Position (kb) 310
311
312
313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 309.567 kb on + strand, within Atu3283 at 309.573 kb on - strand, within Atu3283 at 309.575 kb on - strand, within Atu3283 at 309.609 kb on - strand at 309.678 kb on + strand at 309.694 kb on - strand at 309.721 kb on - strand at 309.833 kb on - strand, within Atu3284 at 309.845 kb on - strand, within Atu3284 at 309.923 kb on + strand, within Atu3284 at 309.923 kb on - strand, within Atu3284 at 309.944 kb on + strand, within Atu3284 at 309.957 kb on - strand, within Atu3284 at 310.019 kb on - strand, within Atu3284 at 310.123 kb on - strand, within Atu3284 at 310.141 kb on - strand, within Atu3284 at 310.144 kb on + strand, within Atu3284 at 310.152 kb on - strand, within Atu3284 at 310.152 kb on - strand, within Atu3284 at 310.154 kb on + strand, within Atu3284 at 310.163 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.272 kb on - strand, within Atu3284 at 310.272 kb on - strand, within Atu3284 at 310.332 kb on + strand, within Atu3284 at 310.342 kb on + strand, within Atu3284 at 310.359 kb on + strand, within Atu3284 at 310.511 kb on + strand at 310.541 kb on + strand at 310.548 kb on + strand at 310.556 kb on - strand at 310.701 kb on + strand at 310.714 kb on - strand at 310.716 kb on - strand at 310.718 kb on + strand at 310.723 kb on + strand at 310.731 kb on - strand at 310.831 kb on + strand, within Atu3285 at 310.981 kb on - strand, within Atu3285 at 311.011 kb on - strand, within Atu3285 at 311.066 kb on + strand, within Atu3285 at 311.124 kb on - strand, within Atu3285 at 311.154 kb on + strand, within Atu3285 at 311.263 kb on + strand, within Atu3285 at 311.320 kb on + strand, within Atu3285 at 311.372 kb on + strand, within Atu3285 at 311.373 kb on + strand, within Atu3285 at 311.380 kb on - strand, within Atu3285 at 311.391 kb on - strand, within Atu3285 at 311.441 kb on + strand, within Atu3285 at 311.441 kb on + strand, within Atu3285 at 311.449 kb on - strand, within Atu3285 at 311.449 kb on - strand, within Atu3285 at 311.633 kb on + strand, within Atu3285 at 311.642 kb on - strand, within Atu3285 at 311.744 kb on + strand, within Atu3285 at 311.795 kb on - strand, within Atu3285 at 311.875 kb on + strand, within Atu3285 at 311.875 kb on + strand, within Atu3285 at 311.883 kb on - strand, within Atu3285 at 311.915 kb on - strand, within Atu3285 at 311.915 kb on - strand, within Atu3285 at 311.972 kb on - strand, within Atu3285 at 311.981 kb on + strand, within Atu3285 at 312.024 kb on - strand, within Atu3285 at 312.039 kb on + strand, within Atu3285 at 312.066 kb on - strand, within Atu3285 at 312.113 kb on + strand, within Atu3285 at 312.121 kb on - strand, within Atu3285 at 312.121 kb on - strand, within Atu3285 at 312.121 kb on - strand, within Atu3285 at 312.156 kb on + strand, within Atu3285 at 312.212 kb on + strand, within Atu3285 at 312.220 kb on - strand, within Atu3285 at 312.303 kb on + strand, within Atu3285 at 312.303 kb on + strand, within Atu3285 at 312.303 kb on + strand, within Atu3285 at 312.303 kb on + strand, within Atu3285 at 312.303 kb on + strand, within Atu3285 at 312.311 kb on - strand, within Atu3285 at 312.311 kb on - strand, within Atu3285 at 312.313 kb on + strand, within Atu3285 at 312.321 kb on - strand, within Atu3285 at 312.321 kb on - strand, within Atu3285 at 312.326 kb on - strand, within Atu3285 at 312.343 kb on - strand, within Atu3285 at 312.415 kb on + strand at 312.418 kb on + strand at 312.418 kb on + strand at 312.492 kb on + strand at 312.515 kb on - strand at 312.548 kb on + strand at 312.548 kb on + strand at 312.570 kb on - strand at 312.638 kb on - strand at 312.651 kb on + strand at 312.715 kb on - strand at 312.730 kb on - strand at 312.790 kb on + strand at 312.835 kb on + strand at 312.835 kb on + strand at 312.906 kb on + strand at 312.906 kb on + strand at 312.914 kb on - strand at 312.928 kb on + strand at 312.957 kb on + strand at 312.996 kb on + strand at 313.012 kb on + strand at 313.035 kb on - strand at 313.060 kb on + strand at 313.154 kb on + strand, within Atu3286 at 313.255 kb on + strand, within Atu3286 at 313.327 kb on + strand, within Atu3286 at 313.397 kb on - strand, within Atu3286 at 313.415 kb on - strand, within Atu3286 at 313.487 kb on - strand, within Atu3286 at 313.521 kb on + strand, within Atu3286
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 309,567 + Atu3283 0.87 -1.6 309,573 - Atu3283 0.88 -3.5 309,575 - Atu3283 0.88 -0.0 309,609 - -0.9 309,678 + +0.2 309,694 - -0.7 309,721 - -0.5 309,833 - Atu3284 0.17 +0.8 309,845 - Atu3284 0.18 +0.2 309,923 + Atu3284 0.27 -1.1 309,923 - Atu3284 0.27 +0.3 309,944 + Atu3284 0.30 +0.0 309,957 - Atu3284 0.31 +0.5 310,019 - Atu3284 0.38 -0.8 310,123 - Atu3284 0.51 -2.7 310,141 - Atu3284 0.53 -0.7 310,144 + Atu3284 0.53 +0.8 310,152 - Atu3284 0.54 +0.8 310,152 - Atu3284 0.54 +0.6 310,154 + Atu3284 0.54 +1.4 310,163 + Atu3284 0.55 -0.3 310,264 + Atu3284 0.67 -0.7 310,264 + Atu3284 0.67 -0.0 310,264 + Atu3284 0.67 -0.5 310,264 + Atu3284 0.67 -2.6 310,264 + Atu3284 0.67 -0.0 310,272 - Atu3284 0.68 -1.4 310,272 - Atu3284 0.68 +1.6 310,332 + Atu3284 0.75 -0.8 310,342 + Atu3284 0.76 +2.4 310,359 + Atu3284 0.78 -0.6 310,511 + -1.0 310,541 + +0.6 310,548 + -1.2 310,556 - -2.1 310,701 + +0.5 310,714 - +0.4 310,716 - -0.1 310,718 + -0.2 310,723 + -1.1 310,731 - +1.0 310,831 + Atu3285 0.14 +1.2 310,981 - Atu3285 0.21 -1.4 311,011 - Atu3285 0.23 +1.9 311,066 + Atu3285 0.25 -0.6 311,124 - Atu3285 0.28 +1.4 311,154 + Atu3285 0.30 -0.2 311,263 + Atu3285 0.35 -0.5 311,320 + Atu3285 0.38 -1.0 311,372 + Atu3285 0.41 +3.6 311,373 + Atu3285 0.41 +0.9 311,380 - Atu3285 0.41 +1.1 311,391 - Atu3285 0.42 +0.1 311,441 + Atu3285 0.44 +0.6 311,441 + Atu3285 0.44 +1.3 311,449 - Atu3285 0.45 -1.2 311,449 - Atu3285 0.45 -0.2 311,633 + Atu3285 0.54 +1.6 311,642 - Atu3285 0.54 +1.2 311,744 + Atu3285 0.59 -0.6 311,795 - Atu3285 0.62 -0.7 311,875 + Atu3285 0.66 +1.6 311,875 + Atu3285 0.66 +0.6 311,883 - Atu3285 0.66 -1.0 311,915 - Atu3285 0.68 +2.4 311,915 - Atu3285 0.68 -0.4 311,972 - Atu3285 0.71 -3.1 311,981 + Atu3285 0.71 +0.1 312,024 - Atu3285 0.73 +0.3 312,039 + Atu3285 0.74 +0.1 312,066 - Atu3285 0.76 +0.1 312,113 + Atu3285 0.78 +0.1 312,121 - Atu3285 0.78 +0.1 312,121 - Atu3285 0.78 +0.8 312,121 - Atu3285 0.78 +0.5 312,156 + Atu3285 0.80 -0.4 312,212 + Atu3285 0.83 +0.7 312,220 - Atu3285 0.83 -1.1 312,303 + Atu3285 0.87 -2.1 312,303 + Atu3285 0.87 +2.1 312,303 + Atu3285 0.87 +0.2 312,303 + Atu3285 0.87 -1.5 312,303 + Atu3285 0.87 +0.3 312,311 - Atu3285 0.88 +0.1 312,311 - Atu3285 0.88 +0.4 312,313 + Atu3285 0.88 -1.0 312,321 - Atu3285 0.88 -0.1 312,321 - Atu3285 0.88 +0.3 312,326 - Atu3285 0.89 +2.9 312,343 - Atu3285 0.89 +1.0 312,415 + +0.2 312,418 + +0.5 312,418 + +1.0 312,492 + -0.8 312,515 - -1.2 312,548 + -1.0 312,548 + -0.9 312,570 - -0.8 312,638 - +1.9 312,651 + -2.6 312,715 - +0.6 312,730 - -0.2 312,790 + +0.4 312,835 + +0.1 312,835 + -2.5 312,906 + +0.6 312,906 + -2.9 312,914 - +0.7 312,928 + +1.1 312,957 + -1.6 312,996 + +0.1 313,012 + -0.3 313,035 - -2.7 313,060 + +0.1 313,154 + Atu3286 0.19 +0.7 313,255 + Atu3286 0.32 -1.1 313,327 + Atu3286 0.41 -0.6 313,397 - Atu3286 0.50 +1.1 313,415 - Atu3286 0.53 -1.0 313,487 - Atu3286 0.62 -1.0 313,521 + Atu3286 0.66 -0.6
Or see this region's nucleotide sequence