Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0794 and Atu0795 are separated by 151 nucleotides Atu0795 and Atu0796 are separated by 51 nucleotides Atu0796 and Atu0797 are separated by 48 nucleotides
Atu0794: Atu0794 - cell cycle regulated site-specific DNA-methyltransferase protein, at 790,755 to 791,900
Atu0794
Atu0795: Atu0795 - hypothetical protein, at 792,052 to 792,285
Atu0795
Atu0796: Atu0796 - putative peptidase, at 792,337 to 793,092
Atu0796
Atu0797: Atu0797 - hydrolase, at 793,141 to 793,752
Atu0797
Position (kb) 792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 792.085 kb on + strand, within Atu0795 at 792.178 kb on - strand, within Atu0795 at 792.180 kb on + strand, within Atu0795 at 792.194 kb on + strand, within Atu0795 at 792.267 kb on - strand at 792.269 kb on - strand at 792.269 kb on - strand at 792.272 kb on + strand at 792.328 kb on - strand at 792.387 kb on + strand at 792.395 kb on + strand at 792.395 kb on - strand at 792.434 kb on + strand, within Atu0796 at 792.488 kb on + strand, within Atu0796 at 792.488 kb on + strand, within Atu0796 at 792.565 kb on - strand, within Atu0796 at 792.651 kb on - strand, within Atu0796 at 792.692 kb on - strand, within Atu0796 at 792.694 kb on + strand, within Atu0796 at 792.951 kb on + strand, within Atu0796 at 792.976 kb on - strand, within Atu0796 at 792.981 kb on - strand, within Atu0796 at 793.098 kb on + strand at 793.098 kb on + strand at 793.106 kb on - strand at 793.106 kb on - strand at 793.106 kb on - strand at 793.120 kb on - strand at 793.139 kb on + strand at 793.139 kb on + strand at 793.146 kb on + strand at 793.146 kb on - strand at 793.187 kb on - strand at 793.220 kb on + strand, within Atu0797 at 793.220 kb on + strand, within Atu0797
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 792,085 + Atu0795 0.14 -0.8 792,178 - Atu0795 0.54 +1.0 792,180 + Atu0795 0.55 +1.4 792,194 + Atu0795 0.61 +0.1 792,267 - +0.3 792,269 - +0.1 792,269 - +1.3 792,272 + +0.9 792,328 - +0.1 792,387 + -1.6 792,395 + -0.6 792,395 - +0.9 792,434 + Atu0796 0.13 -0.9 792,488 + Atu0796 0.20 -1.5 792,488 + Atu0796 0.20 -1.4 792,565 - Atu0796 0.30 +1.0 792,651 - Atu0796 0.42 -0.1 792,692 - Atu0796 0.47 -0.3 792,694 + Atu0796 0.47 -2.1 792,951 + Atu0796 0.81 +0.1 792,976 - Atu0796 0.85 +0.6 792,981 - Atu0796 0.85 -3.4 793,098 + +0.1 793,098 + -0.9 793,106 - +0.4 793,106 - +0.7 793,106 - -0.3 793,120 - +0.4 793,139 + +0.5 793,139 + -3.7 793,146 + -0.6 793,146 - +0.7 793,187 - +0.3 793,220 + Atu0797 0.13 +1.7 793,220 + Atu0797 0.13 -0.1
Or see this region's nucleotide sequence