Strain Fitness in Agrobacterium fabrum C58 around Atu0633

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0631 and Atu0632 overlap by 4 nucleotidesAtu0632 and Atu0633 are separated by 6 nucleotidesAtu0633 and Atu0634 are separated by 191 nucleotides Atu0631: Atu0631 - molybdenum cofactor biosynthesis protein B, at 619,257 to 619,826 Atu0631 Atu0632: Atu0632 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 619,823 to 620,722 Atu0632 Atu0633: Atu0633 - hypothetical protein, at 620,729 to 622,573 Atu0633 Atu0634: Atu0634 - octaprenyl-diphosphate synthase, at 622,765 to 623,781 Atu0634 Position (kb) 620 621 622 623Strain fitness (log2 ratio) -1 0 1at 619.749 kb on + strand, within Atu0631at 619.822 kb on - strandat 622.595 kb on - strandat 622.706 kb on - strandat 622.725 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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619,749 + Atu0631 0.86 -0.3
619,822 - -0.2
622,595 - -0.6
622,706 - +1.1
622,725 + +0.4

Or see this region's nucleotide sequence