Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0530 and Atu0531 are separated by 12 nucleotides Atu0531 and Atu0532 overlap by 17 nucleotides Atu0532 and Atu0533 are separated by 72 nucleotides Atu0533 and Atu0534 are separated by 33 nucleotides
Atu0530: Atu0530 - UDP-galactose 4-epimerase, at 523,619 to 524,650
Atu0530
Atu0531: Atu0531 - hypothetical protein, at 524,663 to 525,415
Atu0531
Atu0532: Atu0532 - hypothetical protein, at 525,399 to 525,809
Atu0532
Atu0533: Atu0533 - putative inhibitor of septum formation, at 525,882 to 526,505
Atu0533
Atu0534: Atu0534 - translation initiation factor IF-1, at 526,539 to 526,838
Atu0534
Position (kb) 525
526 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 524.399 kb on - strand, within Atu0530 at 524.404 kb on - strand, within Atu0530 at 524.404 kb on - strand, within Atu0530 at 524.516 kb on + strand, within Atu0530 at 524.644 kb on + strand at 524.861 kb on - strand, within Atu0531 at 524.914 kb on - strand, within Atu0531 at 525.030 kb on + strand, within Atu0531 at 525.042 kb on + strand, within Atu0531 at 525.073 kb on + strand, within Atu0531 at 525.081 kb on - strand, within Atu0531 at 525.108 kb on + strand, within Atu0531 at 525.122 kb on - strand, within Atu0531 at 525.255 kb on + strand, within Atu0531 at 525.460 kb on - strand, within Atu0532 at 525.515 kb on - strand, within Atu0532 at 525.515 kb on - strand, within Atu0532 at 525.515 kb on - strand, within Atu0532 at 525.569 kb on + strand, within Atu0532 at 525.674 kb on + strand, within Atu0532 at 525.838 kb on + strand at 525.879 kb on + strand at 525.916 kb on - strand at 526.162 kb on + strand, within Atu0533 at 526.280 kb on - strand, within Atu0533 at 526.335 kb on - strand, within Atu0533
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 524,399 - Atu0530 0.76 -1.2 524,404 - Atu0530 0.76 +1.0 524,404 - Atu0530 0.76 +0.7 524,516 + Atu0530 0.87 -1.6 524,644 + -1.6 524,861 - Atu0531 0.26 +1.4 524,914 - Atu0531 0.33 +0.7 525,030 + Atu0531 0.49 -1.5 525,042 + Atu0531 0.50 -0.2 525,073 + Atu0531 0.54 +0.7 525,081 - Atu0531 0.56 +0.4 525,108 + Atu0531 0.59 +0.5 525,122 - Atu0531 0.61 -0.1 525,255 + Atu0531 0.79 +1.7 525,460 - Atu0532 0.15 +1.1 525,515 - Atu0532 0.28 -1.0 525,515 - Atu0532 0.28 -2.3 525,515 - Atu0532 0.28 +1.3 525,569 + Atu0532 0.41 -1.7 525,674 + Atu0532 0.67 -2.9 525,838 + +0.4 525,879 + +1.8 525,916 - +1.0 526,162 + Atu0533 0.45 -2.5 526,280 - Atu0533 0.64 -1.2 526,335 - Atu0533 0.73 -2.3
Or see this region's nucleotide sequence