Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0229 and Atu0230 are separated by 3 nucleotides Atu0230 and Atu0231 overlap by 2 nucleotides Atu0231 and Atu0232 are separated by 87 nucleotides Atu0232 and Atu0233 are separated by 182 nucleotides
Atu0229: Atu0229 - hypothetical protein, at 231,481 to 231,930
Atu0229
Atu0230: Atu0230 - hypothetical protein, at 231,934 to 232,092
Atu0230
Atu0231: Atu0231 - GMP synthase, at 232,091 to 232,765
Atu0231
Atu0232: Atu0232 - hypothetical protein, at 232,853 to 233,041
Atu0232
Atu0233: Atu0233 - lysozyme, at 233,224 to 234,321
Atu0233
Position (kb) 232
233
234 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 231.899 kb on - strand at 231.940 kb on - strand at 232.010 kb on - strand, within Atu0230 at 232.124 kb on + strand at 232.165 kb on - strand, within Atu0231 at 232.252 kb on + strand, within Atu0231 at 232.273 kb on - strand, within Atu0231 at 232.273 kb on - strand, within Atu0231 at 232.293 kb on - strand, within Atu0231 at 232.306 kb on + strand, within Atu0231 at 232.331 kb on - strand, within Atu0231 at 232.334 kb on + strand, within Atu0231 at 232.401 kb on + strand, within Atu0231 at 232.434 kb on - strand, within Atu0231 at 232.434 kb on - strand, within Atu0231 at 232.541 kb on + strand, within Atu0231 at 232.727 kb on + strand at 232.744 kb on + strand at 232.884 kb on - strand, within Atu0232 at 232.902 kb on + strand, within Atu0232 at 232.952 kb on - strand, within Atu0232 at 232.953 kb on - strand, within Atu0232 at 232.953 kb on - strand, within Atu0232 at 232.953 kb on - strand, within Atu0232 at 232.965 kb on - strand, within Atu0232 at 232.965 kb on - strand, within Atu0232 at 233.013 kb on + strand, within Atu0232 at 233.021 kb on - strand, within Atu0232 at 233.200 kb on - strand at 233.210 kb on + strand at 233.258 kb on - strand at 233.388 kb on + strand, within Atu0233 at 233.429 kb on - strand, within Atu0233 at 233.432 kb on + strand, within Atu0233 at 233.448 kb on + strand, within Atu0233 at 233.486 kb on - strand, within Atu0233 at 233.619 kb on + strand, within Atu0233 at 233.654 kb on + strand, within Atu0233 at 233.708 kb on + strand, within Atu0233 at 233.708 kb on + strand, within Atu0233 at 233.708 kb on - strand, within Atu0233 at 233.716 kb on - strand, within Atu0233 at 233.730 kb on + strand, within Atu0233 at 233.734 kb on + strand, within Atu0233 at 233.734 kb on + strand, within Atu0233 at 233.742 kb on - strand, within Atu0233 at 233.752 kb on - strand, within Atu0233 at 233.830 kb on + strand, within Atu0233 at 233.897 kb on - strand, within Atu0233 at 233.999 kb on + strand, within Atu0233
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 231,899 - +0.9 231,940 - -2.7 232,010 - Atu0230 0.48 +1.0 232,124 + +0.8 232,165 - Atu0231 0.11 -1.8 232,252 + Atu0231 0.24 -1.6 232,273 - Atu0231 0.27 -1.8 232,273 - Atu0231 0.27 -0.8 232,293 - Atu0231 0.30 +0.1 232,306 + Atu0231 0.32 +0.4 232,331 - Atu0231 0.36 -3.7 232,334 + Atu0231 0.36 -2.0 232,401 + Atu0231 0.46 -1.6 232,434 - Atu0231 0.51 -0.3 232,434 - Atu0231 0.51 +1.2 232,541 + Atu0231 0.67 -0.3 232,727 + -0.9 232,744 + -3.9 232,884 - Atu0232 0.16 +1.0 232,902 + Atu0232 0.26 -0.7 232,952 - Atu0232 0.52 +0.2 232,953 - Atu0232 0.53 -0.6 232,953 - Atu0232 0.53 -2.9 232,953 - Atu0232 0.53 +0.7 232,965 - Atu0232 0.59 +0.3 232,965 - Atu0232 0.59 +2.2 233,013 + Atu0232 0.85 -0.4 233,021 - Atu0232 0.89 +0.1 233,200 - +2.8 233,210 + -0.5 233,258 - -0.9 233,388 + Atu0233 0.15 +0.2 233,429 - Atu0233 0.19 +0.0 233,432 + Atu0233 0.19 +0.6 233,448 + Atu0233 0.20 +0.5 233,486 - Atu0233 0.24 -3.8 233,619 + Atu0233 0.36 +0.8 233,654 + Atu0233 0.39 -0.3 233,708 + Atu0233 0.44 -3.5 233,708 + Atu0233 0.44 -1.2 233,708 - Atu0233 0.44 -1.9 233,716 - Atu0233 0.45 -1.3 233,730 + Atu0233 0.46 +0.1 233,734 + Atu0233 0.46 -1.8 233,734 + Atu0233 0.46 +1.0 233,742 - Atu0233 0.47 +0.5 233,752 - Atu0233 0.48 +0.7 233,830 + Atu0233 0.55 +0.4 233,897 - Atu0233 0.61 -1.1 233,999 + Atu0233 0.71 +0.7
Or see this region's nucleotide sequence