Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0073 and Atu0074 are separated by 22 nucleotides Atu0074 and Atu0075 are separated by 3 nucleotides Atu0075 and Atu0076 are separated by 6 nucleotides Atu0076 and Atu0077 are separated by 48 nucleotides
Atu0073: Atu0073 - recF-like protein, at 76,045 to 77,172
Atu0073
Atu0074: Atu0074 - molybdopterin biosynthesis protein, at 77,195 to 77,956
Atu0074
Atu0075: Atu0075 - hypothetical protein, at 77,960 to 78,436
Atu0075
Atu0076: Atu0076 - hypothetical protein, at 78,443 to 79,132
Atu0076
Atu0077: Atu0077 - D-isomer specific 2-hydroxyacid dehydrogenases family protein, at 79,181 to 80,185
Atu0077
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 76.965 kb on - strand, within Atu0073 at 76.988 kb on + strand, within Atu0073 at 77.020 kb on + strand, within Atu0073 at 77.049 kb on + strand, within Atu0073 at 77.057 kb on - strand, within Atu0073 at 77.057 kb on - strand, within Atu0073 at 77.193 kb on + strand at 77.203 kb on + strand at 77.216 kb on - strand at 77.316 kb on + strand, within Atu0074 at 77.378 kb on - strand, within Atu0074 at 77.405 kb on + strand, within Atu0074 at 77.454 kb on + strand, within Atu0074 at 77.530 kb on + strand, within Atu0074 at 77.564 kb on - strand, within Atu0074 at 77.660 kb on - strand, within Atu0074 at 77.693 kb on + strand, within Atu0074 at 77.730 kb on + strand, within Atu0074 at 77.740 kb on + strand, within Atu0074 at 77.768 kb on + strand, within Atu0074 at 77.776 kb on - strand, within Atu0074 at 77.806 kb on + strand, within Atu0074 at 77.812 kb on + strand, within Atu0074 at 77.841 kb on - strand, within Atu0074 at 77.883 kb on + strand at 77.883 kb on - strand at 77.888 kb on - strand at 78.190 kb on + strand, within Atu0075 at 78.389 kb on + strand at 78.397 kb on - strand at 78.397 kb on - strand at 78.458 kb on + strand at 78.491 kb on + strand at 78.497 kb on + strand at 78.501 kb on + strand at 78.550 kb on + strand, within Atu0076 at 78.588 kb on + strand, within Atu0076 at 78.657 kb on - strand, within Atu0076 at 78.782 kb on + strand, within Atu0076 at 78.801 kb on + strand, within Atu0076 at 78.819 kb on + strand, within Atu0076 at 78.819 kb on + strand, within Atu0076 at 78.828 kb on + strand, within Atu0076 at 78.828 kb on + strand, within Atu0076 at 78.893 kb on + strand, within Atu0076 at 78.939 kb on + strand, within Atu0076 at 78.939 kb on + strand, within Atu0076 at 78.939 kb on + strand, within Atu0076 at 78.947 kb on - strand, within Atu0076 at 78.980 kb on - strand, within Atu0076 at 78.980 kb on - strand, within Atu0076 at 79.015 kb on - strand, within Atu0076 at 79.020 kb on + strand, within Atu0076 at 79.179 kb on + strand at 79.187 kb on - strand at 79.187 kb on - strand at 79.322 kb on - strand, within Atu0077 at 79.342 kb on + strand, within Atu0077
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 76,965 - Atu0073 0.82 -2.9 76,988 + Atu0073 0.84 -0.7 77,020 + Atu0073 0.86 -2.7 77,049 + Atu0073 0.89 +0.3 77,057 - Atu0073 0.90 -2.1 77,057 - Atu0073 0.90 -0.8 77,193 + +0.6 77,203 + -1.4 77,216 - -1.2 77,316 + Atu0074 0.16 -0.6 77,378 - Atu0074 0.24 -1.1 77,405 + Atu0074 0.28 -2.2 77,454 + Atu0074 0.34 -1.4 77,530 + Atu0074 0.44 -3.6 77,564 - Atu0074 0.48 -0.5 77,660 - Atu0074 0.61 -0.8 77,693 + Atu0074 0.65 -1.4 77,730 + Atu0074 0.70 -3.6 77,740 + Atu0074 0.72 -2.9 77,768 + Atu0074 0.75 -1.5 77,776 - Atu0074 0.76 -1.2 77,806 + Atu0074 0.80 -2.5 77,812 + Atu0074 0.81 +2.1 77,841 - Atu0074 0.85 -0.1 77,883 + -0.6 77,883 - -0.4 77,888 - -1.3 78,190 + Atu0075 0.48 -1.5 78,389 + -0.9 78,397 - -0.8 78,397 - +2.1 78,458 + +0.5 78,491 + +0.4 78,497 + -0.3 78,501 + -0.6 78,550 + Atu0076 0.16 +0.7 78,588 + Atu0076 0.21 -2.3 78,657 - Atu0076 0.31 +2.4 78,782 + Atu0076 0.49 -0.8 78,801 + Atu0076 0.52 +0.4 78,819 + Atu0076 0.54 -1.9 78,819 + Atu0076 0.54 +0.8 78,828 + Atu0076 0.56 +1.2 78,828 + Atu0076 0.56 -1.5 78,893 + Atu0076 0.65 -0.3 78,939 + Atu0076 0.72 -2.8 78,939 + Atu0076 0.72 +0.8 78,939 + Atu0076 0.72 +1.2 78,947 - Atu0076 0.73 -0.4 78,980 - Atu0076 0.78 +0.6 78,980 - Atu0076 0.78 -0.9 79,015 - Atu0076 0.83 +1.4 79,020 + Atu0076 0.84 -0.4 79,179 + -0.1 79,187 - +0.7 79,187 - +1.1 79,322 - Atu0077 0.14 +0.1 79,342 + Atu0077 0.16 +0.9
Or see this region's nucleotide sequence