Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu4441 and Atu4442 are separated by 114 nucleotides Atu4442 and Atu4443 are separated by 71 nucleotides Atu4443 and Atu4444 are separated by 213 nucleotides
Atu4441: Atu4441 - amidase, at 1,585,223 to 1,586,620
Atu4441
Atu4442: Atu4442 - hypothetical protein, at 1,586,735 to 1,587,283
Atu4442
Atu4443: Atu4443 - hypothetical protein, at 1,587,355 to 1,587,705
Atu4443
Atu4444: Atu4444 - hippurate hydrolase, at 1,587,919 to 1,589,043
Atu4444
Position (kb) 1586
1587
1588 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 1585.805 kb on + strand, within Atu4441 at 1585.831 kb on + strand, within Atu4441 at 1585.831 kb on + strand, within Atu4441 at 1585.907 kb on + strand, within Atu4441 at 1586.031 kb on + strand, within Atu4441 at 1586.031 kb on + strand, within Atu4441 at 1586.039 kb on - strand, within Atu4441 at 1586.111 kb on + strand, within Atu4441 at 1586.119 kb on - strand, within Atu4441 at 1586.136 kb on + strand, within Atu4441 at 1586.144 kb on - strand, within Atu4441 at 1586.286 kb on + strand, within Atu4441 at 1586.364 kb on - strand, within Atu4441 at 1586.383 kb on - strand, within Atu4441 at 1586.410 kb on - strand, within Atu4441 at 1586.432 kb on - strand, within Atu4441 at 1586.603 kb on - strand at 1586.717 kb on - strand at 1586.758 kb on + strand at 1586.788 kb on - strand at 1586.802 kb on + strand, within Atu4442 at 1586.808 kb on - strand, within Atu4442 at 1586.808 kb on - strand, within Atu4442 at 1586.840 kb on + strand, within Atu4442 at 1586.877 kb on - strand, within Atu4442 at 1586.944 kb on - strand, within Atu4442 at 1586.990 kb on + strand, within Atu4442 at 1587.067 kb on + strand, within Atu4442 at 1587.109 kb on + strand, within Atu4442 at 1587.197 kb on + strand, within Atu4442 at 1587.379 kb on + strand at 1587.388 kb on - strand at 1587.398 kb on + strand, within Atu4443 at 1587.406 kb on - strand, within Atu4443 at 1587.416 kb on + strand, within Atu4443 at 1587.416 kb on + strand, within Atu4443 at 1587.493 kb on + strand, within Atu4443 at 1587.501 kb on - strand, within Atu4443 at 1587.582 kb on + strand, within Atu4443 at 1587.723 kb on - strand at 1587.894 kb on - strand at 1587.960 kb on + strand at 1587.960 kb on + strand at 1588.190 kb on + strand, within Atu4444 at 1588.213 kb on - strand, within Atu4444 at 1588.225 kb on + strand, within Atu4444
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 1,585,805 + Atu4441 0.42 -0.4 1,585,831 + Atu4441 0.43 +0.9 1,585,831 + Atu4441 0.43 +0.3 1,585,907 + Atu4441 0.49 -0.3 1,586,031 + Atu4441 0.58 +0.3 1,586,031 + Atu4441 0.58 -0.2 1,586,039 - Atu4441 0.58 +0.3 1,586,111 + Atu4441 0.64 -0.2 1,586,119 - Atu4441 0.64 +0.7 1,586,136 + Atu4441 0.65 +1.6 1,586,144 - Atu4441 0.66 -0.0 1,586,286 + Atu4441 0.76 +0.2 1,586,364 - Atu4441 0.82 +0.2 1,586,383 - Atu4441 0.83 +0.5 1,586,410 - Atu4441 0.85 +1.2 1,586,432 - Atu4441 0.86 -1.0 1,586,603 - +1.5 1,586,717 - +1.1 1,586,758 + +0.8 1,586,788 - +2.3 1,586,802 + Atu4442 0.12 +0.0 1,586,808 - Atu4442 0.13 -1.0 1,586,808 - Atu4442 0.13 +1.4 1,586,840 + Atu4442 0.19 +0.2 1,586,877 - Atu4442 0.26 -1.4 1,586,944 - Atu4442 0.38 -0.8 1,586,990 + Atu4442 0.46 +0.5 1,587,067 + Atu4442 0.60 +1.2 1,587,109 + Atu4442 0.68 -0.0 1,587,197 + Atu4442 0.84 +2.5 1,587,379 + +0.3 1,587,388 - +1.1 1,587,398 + Atu4443 0.12 +0.2 1,587,406 - Atu4443 0.15 +0.5 1,587,416 + Atu4443 0.17 +4.8 1,587,416 + Atu4443 0.17 -0.5 1,587,493 + Atu4443 0.39 +1.3 1,587,501 - Atu4443 0.42 -0.4 1,587,582 + Atu4443 0.65 +0.1 1,587,723 - +0.3 1,587,894 - +1.7 1,587,960 + +0.8 1,587,960 + +0.5 1,588,190 + Atu4444 0.24 +0.8 1,588,213 - Atu4444 0.26 +0.0 1,588,225 + Atu4444 0.27 +0.9
Or see this region's nucleotide sequence