Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3876 and Atu3877 are separated by 122 nucleotides Atu3877 and Atu3878 overlap by 4 nucleotides
Atu3876: Atu3876 - glycerol-3-phosphate dehydrogenase, at 970,174 to 971,898
Atu3876
Atu3877: Atu3877 - aldo/keto reductase, at 972,021 to 973,019
Atu3877
Atu3878: Atu3878 - transcriptional regulator, at 973,016 to 973,951
Atu3878
Position (kb) 972
973
974 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 971.046 kb on + strand, within Atu3876 at 971.048 kb on + strand, within Atu3876 at 971.048 kb on + strand, within Atu3876 at 971.074 kb on + strand, within Atu3876 at 971.079 kb on + strand, within Atu3876 at 971.082 kb on - strand, within Atu3876 at 971.082 kb on - strand, within Atu3876 at 971.196 kb on + strand, within Atu3876 at 971.265 kb on + strand, within Atu3876 at 971.292 kb on - strand, within Atu3876 at 971.407 kb on - strand, within Atu3876 at 971.481 kb on - strand, within Atu3876 at 971.487 kb on + strand, within Atu3876 at 971.489 kb on - strand, within Atu3876 at 971.695 kb on + strand, within Atu3876 at 971.727 kb on + strand at 971.772 kb on + strand at 971.900 kb on + strand at 971.973 kb on - strand at 972.053 kb on + strand at 972.066 kb on - strand at 972.079 kb on - strand at 972.125 kb on + strand, within Atu3877 at 972.185 kb on - strand, within Atu3877 at 972.187 kb on + strand, within Atu3877 at 972.195 kb on - strand, within Atu3877 at 972.241 kb on + strand, within Atu3877 at 972.241 kb on + strand, within Atu3877 at 972.249 kb on - strand, within Atu3877 at 972.316 kb on - strand, within Atu3877 at 972.334 kb on + strand, within Atu3877 at 972.344 kb on + strand, within Atu3877 at 972.414 kb on + strand, within Atu3877 at 972.544 kb on + strand, within Atu3877 at 972.552 kb on - strand, within Atu3877 at 972.552 kb on - strand, within Atu3877 at 972.613 kb on - strand, within Atu3877 at 972.615 kb on - strand, within Atu3877 at 972.639 kb on - strand, within Atu3877 at 972.642 kb on + strand, within Atu3877 at 972.659 kb on - strand, within Atu3877 at 972.677 kb on - strand, within Atu3877 at 972.742 kb on + strand, within Atu3877 at 972.783 kb on - strand, within Atu3877 at 972.825 kb on + strand, within Atu3877 at 972.837 kb on + strand, within Atu3877 at 972.837 kb on + strand, within Atu3877 at 972.837 kb on + strand, within Atu3877 at 972.946 kb on + strand at 972.946 kb on - strand at 972.953 kb on + strand at 972.954 kb on + strand at 973.072 kb on + strand at 973.146 kb on + strand, within Atu3878 at 973.146 kb on + strand, within Atu3878 at 973.180 kb on + strand, within Atu3878 at 973.180 kb on + strand, within Atu3878 at 973.202 kb on + strand, within Atu3878 at 973.246 kb on - strand, within Atu3878 at 973.246 kb on - strand, within Atu3878 at 973.339 kb on + strand, within Atu3878 at 973.386 kb on + strand, within Atu3878 at 973.388 kb on + strand, within Atu3878 at 973.389 kb on - strand, within Atu3878 at 973.396 kb on - strand, within Atu3878 at 973.421 kb on - strand, within Atu3878 at 973.435 kb on + strand, within Atu3878 at 973.443 kb on - strand, within Atu3878 at 973.445 kb on - strand, within Atu3878 at 973.445 kb on - strand, within Atu3878 at 973.449 kb on + strand, within Atu3878 at 973.479 kb on - strand, within Atu3878 at 973.484 kb on - strand, within Atu3878 at 973.527 kb on + strand, within Atu3878 at 973.527 kb on + strand, within Atu3878 at 973.535 kb on - strand, within Atu3878 at 973.535 kb on - strand, within Atu3878 at 973.538 kb on + strand, within Atu3878 at 973.721 kb on + strand, within Atu3878 at 973.729 kb on + strand, within Atu3878 at 973.737 kb on - strand, within Atu3878 at 973.801 kb on + strand, within Atu3878 at 973.944 kb on + strand at 973.952 kb on - strand at 974.009 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 971,046 + Atu3876 0.51 -1.4 971,048 + Atu3876 0.51 -0.4 971,048 + Atu3876 0.51 +1.4 971,074 + Atu3876 0.52 -0.2 971,079 + Atu3876 0.52 +0.7 971,082 - Atu3876 0.53 -0.1 971,082 - Atu3876 0.53 -1.2 971,196 + Atu3876 0.59 +0.8 971,265 + Atu3876 0.63 -0.8 971,292 - Atu3876 0.65 -0.4 971,407 - Atu3876 0.71 +0.0 971,481 - Atu3876 0.76 -0.1 971,487 + Atu3876 0.76 +0.3 971,489 - Atu3876 0.76 -0.5 971,695 + Atu3876 0.88 -0.1 971,727 + -0.1 971,772 + +0.6 971,900 + -0.3 971,973 - +1.5 972,053 + +0.3 972,066 - +0.3 972,079 - -0.6 972,125 + Atu3877 0.10 +0.5 972,185 - Atu3877 0.16 -0.1 972,187 + Atu3877 0.17 +0.7 972,195 - Atu3877 0.17 -0.1 972,241 + Atu3877 0.22 -0.1 972,241 + Atu3877 0.22 -0.7 972,249 - Atu3877 0.23 +0.5 972,316 - Atu3877 0.30 -0.6 972,334 + Atu3877 0.31 +0.5 972,344 + Atu3877 0.32 +1.2 972,414 + Atu3877 0.39 -1.1 972,544 + Atu3877 0.52 -0.4 972,552 - Atu3877 0.53 +0.6 972,552 - Atu3877 0.53 +0.5 972,613 - Atu3877 0.59 +1.3 972,615 - Atu3877 0.59 +0.1 972,639 - Atu3877 0.62 -0.1 972,642 + Atu3877 0.62 +1.0 972,659 - Atu3877 0.64 +0.6 972,677 - Atu3877 0.66 +0.3 972,742 + Atu3877 0.72 +0.8 972,783 - Atu3877 0.76 +0.5 972,825 + Atu3877 0.80 +0.3 972,837 + Atu3877 0.82 +1.7 972,837 + Atu3877 0.82 +2.0 972,837 + Atu3877 0.82 -0.1 972,946 + +0.4 972,946 - -0.7 972,953 + +0.0 972,954 + +0.4 973,072 + +1.3 973,146 + Atu3878 0.14 +0.7 973,146 + Atu3878 0.14 -0.7 973,180 + Atu3878 0.18 -0.6 973,180 + Atu3878 0.18 -2.7 973,202 + Atu3878 0.20 -0.9 973,246 - Atu3878 0.25 +1.1 973,246 - Atu3878 0.25 -0.2 973,339 + Atu3878 0.35 -0.7 973,386 + Atu3878 0.40 -2.5 973,388 + Atu3878 0.40 +0.7 973,389 - Atu3878 0.40 -0.1 973,396 - Atu3878 0.41 +1.0 973,421 - Atu3878 0.43 +0.1 973,435 + Atu3878 0.45 -1.1 973,443 - Atu3878 0.46 +2.3 973,445 - Atu3878 0.46 +0.6 973,445 - Atu3878 0.46 +3.3 973,449 + Atu3878 0.46 -0.5 973,479 - Atu3878 0.49 -0.4 973,484 - Atu3878 0.50 +0.5 973,527 + Atu3878 0.55 -0.6 973,527 + Atu3878 0.55 +0.4 973,535 - Atu3878 0.55 +0.0 973,535 - Atu3878 0.55 -0.1 973,538 + Atu3878 0.56 -0.6 973,721 + Atu3878 0.75 +0.3 973,729 + Atu3878 0.76 -1.1 973,737 - Atu3878 0.77 +1.9 973,801 + Atu3878 0.84 +1.0 973,944 + -1.7 973,952 - -0.0 974,009 + +1.3
Or see this region's nucleotide sequence