Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3699 and Atu3700 are separated by 253 nucleotides Atu3700 and Atu3701 are separated by 223 nucleotides Atu3701 and Atu3702 are separated by 286 nucleotides Atu3702 and Atu3703 are separated by 136 nucleotides
Atu3699: Atu3699 - hypothetical protein, at 778,772 to 779,281
Atu3699
Atu3700: Atu3700 - tRNA-Gly, at 779,535 to 779,609
Atu3700
Atu3701: Atu3701 - glutathione S-transferase, at 779,833 to 780,525
Atu3701
Atu3702: Atu3702 - tRNA-Met, at 780,812 to 780,888
Atu3702
Atu3703: Atu3703 - tRNA-specific 2-thiouridylase MnmA, at 781,025 to 782,167
Atu3703
Position (kb) 779
780
781 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 778.839 kb on + strand, within Atu3699 at 778.958 kb on - strand, within Atu3699 at 778.978 kb on - strand, within Atu3699 at 779.191 kb on - strand, within Atu3699 at 779.325 kb on + strand at 779.333 kb on - strand at 779.333 kb on - strand at 779.342 kb on + strand at 779.345 kb on - strand at 779.699 kb on - strand at 779.739 kb on - strand at 779.754 kb on + strand at 779.820 kb on - strand at 779.858 kb on + strand at 779.868 kb on + strand at 779.942 kb on - strand, within Atu3701 at 779.973 kb on + strand, within Atu3701 at 779.973 kb on + strand, within Atu3701 at 779.973 kb on + strand, within Atu3701 at 779.981 kb on - strand, within Atu3701 at 779.981 kb on - strand, within Atu3701 at 780.004 kb on + strand, within Atu3701 at 780.071 kb on + strand, within Atu3701 at 780.079 kb on - strand, within Atu3701 at 780.110 kb on - strand, within Atu3701 at 780.208 kb on + strand, within Atu3701 at 780.234 kb on - strand, within Atu3701 at 780.317 kb on - strand, within Atu3701 at 780.418 kb on - strand, within Atu3701 at 780.438 kb on - strand, within Atu3701 at 780.438 kb on - strand, within Atu3701 at 780.451 kb on + strand, within Atu3701 at 780.466 kb on + strand at 780.532 kb on - strand at 780.534 kb on + strand at 780.650 kb on + strand at 780.657 kb on + strand at 780.658 kb on - strand at 780.665 kb on - strand at 780.677 kb on + strand at 780.738 kb on - strand at 780.759 kb on - strand at 781.040 kb on - strand at 781.075 kb on + strand at 781.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 778,839 + Atu3699 0.13 -1.3 778,958 - Atu3699 0.36 +0.8 778,978 - Atu3699 0.40 +0.5 779,191 - Atu3699 0.82 -0.3 779,325 + +0.1 779,333 - -1.0 779,333 - +0.9 779,342 + -0.4 779,345 - +0.1 779,699 - +0.2 779,739 - +0.4 779,754 + +0.2 779,820 - +1.8 779,858 + -0.2 779,868 + +1.4 779,942 - Atu3701 0.16 +0.0 779,973 + Atu3701 0.20 +0.2 779,973 + Atu3701 0.20 +2.4 779,973 + Atu3701 0.20 -1.8 779,981 - Atu3701 0.21 -0.4 779,981 - Atu3701 0.21 +0.2 780,004 + Atu3701 0.25 +1.5 780,071 + Atu3701 0.34 +0.4 780,079 - Atu3701 0.35 +2.7 780,110 - Atu3701 0.40 -3.1 780,208 + Atu3701 0.54 +0.4 780,234 - Atu3701 0.58 -0.2 780,317 - Atu3701 0.70 -0.8 780,418 - Atu3701 0.84 -3.8 780,438 - Atu3701 0.87 +1.6 780,438 - Atu3701 0.87 +1.2 780,451 + Atu3701 0.89 +0.7 780,466 + -0.6 780,532 - +0.2 780,534 + +1.3 780,650 + -1.0 780,657 + -0.6 780,658 - -2.1 780,665 - -1.1 780,677 + +1.0 780,738 - +0.4 780,759 - +1.5 781,040 - +0.2 781,075 + -0.7 781,092 + +0.6
Or see this region's nucleotide sequence