Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3559 and Atu3560 are separated by 52 nucleotides Atu3560 and Atu3561 are separated by 375 nucleotides Atu3561 and Atu3562 overlap by 25 nucleotides
Atu3559: Atu3559 - glycosyltransferase, at 612,705 to 613,799
Atu3559
Atu3560: Atu3560 - glycosyltransferase, at 613,852 to 615,000
Atu3560
Atu3561: Atu3561 - hypothetical protein, at 615,376 to 615,840
Atu3561
Atu3562: Atu3562 - hypothetical protein, at 615,816 to 616,241
Atu3562
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 612.979 kb on - strand, within Atu3559 at 612.995 kb on + strand, within Atu3559 at 613.008 kb on + strand, within Atu3559 at 613.129 kb on + strand, within Atu3559 at 613.131 kb on + strand, within Atu3559 at 613.137 kb on - strand, within Atu3559 at 613.227 kb on - strand, within Atu3559 at 613.363 kb on + strand, within Atu3559 at 613.384 kb on + strand, within Atu3559 at 613.439 kb on + strand, within Atu3559 at 613.469 kb on + strand, within Atu3559 at 613.519 kb on + strand, within Atu3559 at 613.527 kb on - strand, within Atu3559 at 613.544 kb on + strand, within Atu3559 at 613.565 kb on + strand, within Atu3559 at 613.685 kb on + strand, within Atu3559 at 613.685 kb on + strand, within Atu3559 at 613.685 kb on + strand, within Atu3559 at 613.727 kb on + strand at 613.727 kb on + strand at 613.938 kb on + strand at 613.946 kb on - strand at 613.946 kb on - strand at 613.969 kb on - strand, within Atu3560 at 614.119 kb on + strand, within Atu3560 at 614.192 kb on - strand, within Atu3560 at 614.256 kb on + strand, within Atu3560 at 614.366 kb on + strand, within Atu3560 at 614.487 kb on - strand, within Atu3560 at 614.799 kb on + strand, within Atu3560 at 614.924 kb on + strand at 614.924 kb on + strand at 614.932 kb on - strand at 615.041 kb on + strand at 615.059 kb on - strand at 615.076 kb on - strand at 615.319 kb on + strand at 615.327 kb on - strand at 615.339 kb on - strand at 615.396 kb on + strand at 615.419 kb on + strand at 615.427 kb on - strand, within Atu3561 at 615.504 kb on - strand, within Atu3561 at 615.600 kb on - strand, within Atu3561 at 615.677 kb on + strand, within Atu3561 at 615.756 kb on + strand, within Atu3561 at 615.889 kb on + strand, within Atu3562
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 612,979 - Atu3559 0.25 +0.1 612,995 + Atu3559 0.26 -0.7 613,008 + Atu3559 0.28 -1.4 613,129 + Atu3559 0.39 +1.4 613,131 + Atu3559 0.39 -0.0 613,137 - Atu3559 0.39 -1.1 613,227 - Atu3559 0.48 +0.3 613,363 + Atu3559 0.60 +2.4 613,384 + Atu3559 0.62 -0.7 613,439 + Atu3559 0.67 +2.8 613,469 + Atu3559 0.70 -1.6 613,519 + Atu3559 0.74 +0.3 613,527 - Atu3559 0.75 -0.2 613,544 + Atu3559 0.77 -1.8 613,565 + Atu3559 0.79 +0.0 613,685 + Atu3559 0.89 +0.2 613,685 + Atu3559 0.89 -1.8 613,685 + Atu3559 0.89 +0.8 613,727 + +1.2 613,727 + -0.4 613,938 + -1.8 613,946 - -0.7 613,946 - +0.3 613,969 - Atu3560 0.10 +0.4 614,119 + Atu3560 0.23 -2.3 614,192 - Atu3560 0.30 +0.3 614,256 + Atu3560 0.35 +0.4 614,366 + Atu3560 0.45 +0.1 614,487 - Atu3560 0.55 -1.4 614,799 + Atu3560 0.82 -1.8 614,924 + -0.2 614,924 + -0.4 614,932 - +1.5 615,041 + -0.4 615,059 - +0.7 615,076 - +0.8 615,319 + +0.4 615,327 - -1.2 615,339 - +0.1 615,396 + +0.8 615,419 + +0.2 615,427 - Atu3561 0.11 -0.1 615,504 - Atu3561 0.28 -0.3 615,600 - Atu3561 0.48 +0.2 615,677 + Atu3561 0.65 -1.3 615,756 + Atu3561 0.82 -1.5 615,889 + Atu3562 0.17 +0.1
Or see this region's nucleotide sequence