Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3466 and Atu3467 are separated by 29 nucleotides Atu3467 and Atu3468 overlap by 4 nucleotides Atu3468 and Atu3469 are separated by 74 nucleotides Atu3469 and Atu3470 overlap by 28 nucleotides Atu3470 and Atu3471 are separated by 194 nucleotides
Atu3466: Atu3466 - ArsR family transcriptional regulator, at 514,760 to 515,113
Atu3466
Atu3467: Atu3467 - hypothetical protein, at 515,143 to 515,517
Atu3467
Atu3468: Atu3468 - hypothetical protein, at 515,514 to 515,951
Atu3468
Atu3469: Atu3469 - phosphoglyceromutase, at 516,026 to 517,543
Atu3469
Atu3470: Atu3470 - hypothetical protein, at 517,516 to 517,710
Atu3470
Atu3471: Atu3471 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 517,905 to 519,182
Atu3471
Position (kb) 516
517
518 Strain fitness (log2 ratio) -2
-1
0
1
2 at 515.047 kb on + strand, within Atu3466 at 515.116 kb on + strand at 515.118 kb on + strand at 515.223 kb on + strand, within Atu3467 at 515.365 kb on + strand, within Atu3467 at 515.536 kb on + strand at 515.544 kb on - strand at 515.788 kb on + strand, within Atu3468 at 515.935 kb on + strand at 515.960 kb on - strand at 515.962 kb on + strand at 516.697 kb on - strand, within Atu3469 at 517.025 kb on - strand, within Atu3469 at 517.114 kb on + strand, within Atu3469 at 517.162 kb on + strand, within Atu3469 at 517.170 kb on - strand, within Atu3469 at 517.172 kb on - strand, within Atu3469 at 517.690 kb on - strand, within Atu3470 at 517.765 kb on - strand at 517.842 kb on + strand at 517.842 kb on + strand at 517.850 kb on - strand at 517.850 kb on - strand at 517.866 kb on + strand at 518.030 kb on + strand at 518.138 kb on - strand, within Atu3471 at 518.138 kb on - strand, within Atu3471 at 518.138 kb on - strand, within Atu3471 at 518.145 kb on - strand, within Atu3471 at 518.175 kb on - strand, within Atu3471 at 518.228 kb on + strand, within Atu3471 at 518.248 kb on - strand, within Atu3471 at 518.248 kb on - strand, within Atu3471 at 518.288 kb on - strand, within Atu3471 at 518.311 kb on + strand, within Atu3471 at 518.344 kb on + strand, within Atu3471 at 518.409 kb on + strand, within Atu3471
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 515,047 + Atu3466 0.81 -0.5 515,116 + -1.8 515,118 + -0.7 515,223 + Atu3467 0.21 -0.2 515,365 + Atu3467 0.59 +1.0 515,536 + -0.2 515,544 - -1.6 515,788 + Atu3468 0.63 +0.6 515,935 + +0.3 515,960 - -1.4 515,962 + -0.5 516,697 - Atu3469 0.44 +0.4 517,025 - Atu3469 0.66 -0.5 517,114 + Atu3469 0.72 +2.4 517,162 + Atu3469 0.75 +0.1 517,170 - Atu3469 0.75 -2.3 517,172 - Atu3469 0.75 -1.7 517,690 - Atu3470 0.89 -1.8 517,765 - -1.2 517,842 + +0.1 517,842 + +0.6 517,850 - +1.4 517,850 - +1.3 517,866 + -0.3 518,030 + +0.7 518,138 - Atu3471 0.18 -1.5 518,138 - Atu3471 0.18 -1.3 518,138 - Atu3471 0.18 -0.8 518,145 - Atu3471 0.19 -2.4 518,175 - Atu3471 0.21 -0.5 518,228 + Atu3471 0.25 -0.7 518,248 - Atu3471 0.27 -1.7 518,248 - Atu3471 0.27 -0.7 518,288 - Atu3471 0.30 -1.9 518,311 + Atu3471 0.32 -0.9 518,344 + Atu3471 0.34 -1.6 518,409 + Atu3471 0.39 -1.4
Or see this region's nucleotide sequence