Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3459 and Atu3460 are separated by 303 nucleotides Atu3460 and Atu3461 are separated by 27 nucleotides Atu3461 and Atu3462 are separated by 94 nucleotides
Atu3459: Atu3459 - ABC transporter permease, at 507,143 to 508,165
Atu3459
Atu3460: Atu3460 - RhtB family transporter, at 508,469 to 509,101
Atu3460
Atu3461: Atu3461 - GntR family transcriptional regulator, at 509,129 to 509,857
Atu3461
Atu3462: Atu3462 - AraC family transcriptional regulator, at 509,952 to 510,935
Atu3462
Position (kb) 509
510 Strain fitness (log2 ratio) -2
-1
0
1
2 at 508.460 kb on - strand at 508.484 kb on + strand at 508.489 kb on + strand at 508.492 kb on - strand at 508.530 kb on + strand at 508.538 kb on - strand, within Atu3460 at 508.538 kb on - strand, within Atu3460 at 508.538 kb on - strand, within Atu3460 at 508.597 kb on + strand, within Atu3460 at 508.653 kb on - strand, within Atu3460 at 508.653 kb on - strand, within Atu3460 at 508.673 kb on + strand, within Atu3460 at 508.757 kb on - strand, within Atu3460 at 508.780 kb on + strand, within Atu3460 at 508.851 kb on - strand, within Atu3460 at 509.001 kb on - strand, within Atu3460 at 509.058 kb on + strand at 509.059 kb on - strand at 509.078 kb on - strand at 509.148 kb on - strand at 509.175 kb on + strand at 509.201 kb on + strand at 509.277 kb on + strand, within Atu3461 at 509.525 kb on + strand, within Atu3461 at 509.688 kb on - strand, within Atu3461 at 509.704 kb on - strand, within Atu3461 at 509.823 kb on + strand at 509.940 kb on + strand at 510.163 kb on - strand, within Atu3462 at 510.163 kb on - strand, within Atu3462 at 510.275 kb on - strand, within Atu3462 at 510.295 kb on - strand, within Atu3462 at 510.307 kb on - strand, within Atu3462 at 510.322 kb on + strand, within Atu3462 at 510.427 kb on - strand, within Atu3462 at 510.437 kb on + strand, within Atu3462 at 510.438 kb on - strand, within Atu3462 at 510.699 kb on + strand, within Atu3462 at 510.726 kb on + strand, within Atu3462 at 510.726 kb on + strand, within Atu3462 at 510.739 kb on - strand, within Atu3462 at 510.739 kb on - strand, within Atu3462 at 510.773 kb on + strand, within Atu3462 at 510.775 kb on + strand, within Atu3462
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 508,460 - +1.9 508,484 + +0.2 508,489 + -0.2 508,492 - +1.1 508,530 + +0.4 508,538 - Atu3460 0.11 -0.1 508,538 - Atu3460 0.11 -0.6 508,538 - Atu3460 0.11 +0.5 508,597 + Atu3460 0.20 -0.8 508,653 - Atu3460 0.29 -0.2 508,653 - Atu3460 0.29 -2.6 508,673 + Atu3460 0.32 +0.4 508,757 - Atu3460 0.45 -1.5 508,780 + Atu3460 0.49 +0.6 508,851 - Atu3460 0.60 -1.3 509,001 - Atu3460 0.84 -1.3 509,058 + +0.3 509,059 - -0.6 509,078 - +1.2 509,148 - -1.6 509,175 + +0.8 509,201 + -1.6 509,277 + Atu3461 0.20 -0.4 509,525 + Atu3461 0.54 -1.6 509,688 - Atu3461 0.77 -1.5 509,704 - Atu3461 0.79 -2.6 509,823 + -0.0 509,940 + +1.0 510,163 - Atu3462 0.21 +2.4 510,163 - Atu3462 0.21 +0.5 510,275 - Atu3462 0.33 +1.4 510,295 - Atu3462 0.35 +1.2 510,307 - Atu3462 0.36 +1.1 510,322 + Atu3462 0.38 -0.0 510,427 - Atu3462 0.48 +1.9 510,437 + Atu3462 0.49 -0.7 510,438 - Atu3462 0.49 -0.6 510,699 + Atu3462 0.76 -0.9 510,726 + Atu3462 0.79 +0.2 510,726 + Atu3462 0.79 -1.5 510,739 - Atu3462 0.80 -0.9 510,739 - Atu3462 0.80 +0.2 510,773 + Atu3462 0.83 +0.2 510,775 + Atu3462 0.84 -0.6
Or see this region's nucleotide sequence