Strain Fitness in Agrobacterium fabrum C58 around Atu1923

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1921 and Atu1922 are separated by 155 nucleotidesAtu1922 and Atu1923 are separated by 118 nucleotidesAtu1923 and Atu1924 are separated by 195 nucleotidesAtu1924 and Atu1925 are separated by 138 nucleotides Atu1921: Atu1921 - hypothetical protein, at 1,899,652 to 1,900,524 Atu1921 Atu1922: Atu1922 - 50S ribosomal protein L17, at 1,900,680 to 1,901,105 Atu1922 Atu1923: Atu1923 - DNA-directed RNA polymerase alpha subunit, at 1,901,224 to 1,902,234 Atu1923 Atu1924: Atu1924 - 30S ribosomal protein S11, at 1,902,430 to 1,902,819 Atu1924 Atu1925: Atu1925 - 30S ribosomal protein S13, at 1,902,958 to 1,903,326 Atu1925 Position (kb) 1901 1902 1903Strain fitness (log2 ratio) -1 0 1at 1900.254 kb on + strand, within Atu1921at 1900.485 kb on + strandat 1900.583 kb on + strandat 1900.591 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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1,900,254 + Atu1921 0.69 +0.6
1,900,485 + +0.3
1,900,583 + +1.1
1,900,591 - +0.2

Or see this region's nucleotide sequence