Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0209 and Atu0210 are separated by 364 nucleotides Atu0210 and Atu0211 are separated by 18 nucleotides Atu0211 and Atu0212 are separated by 95 nucleotides
Atu0209: Atu0209 - hypothetical protein, at 213,782 to 214,888
Atu0209
Atu0210: Atu0210 - hypothetical protein, at 215,253 to 215,597
Atu0210
Atu0211: Atu0211 - hypothetical protein, at 215,616 to 216,467
Atu0211
Atu0212: Atu0212 - hypothetical protein, at 216,563 to 216,922
Atu0212
Position (kb) 215
216 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 214.296 kb on - strand, within Atu0209 at 214.312 kb on - strand, within Atu0209 at 214.388 kb on + strand, within Atu0209 at 214.427 kb on + strand, within Atu0209 at 214.435 kb on - strand, within Atu0209 at 214.435 kb on - strand, within Atu0209 at 214.492 kb on - strand, within Atu0209 at 214.562 kb on + strand, within Atu0209 at 214.586 kb on + strand, within Atu0209 at 214.594 kb on - strand, within Atu0209 at 214.666 kb on + strand, within Atu0209 at 214.676 kb on - strand, within Atu0209 at 214.700 kb on - strand, within Atu0209 at 214.700 kb on - strand, within Atu0209 at 214.718 kb on + strand, within Atu0209 at 214.718 kb on + strand, within Atu0209 at 214.726 kb on - strand, within Atu0209 at 214.726 kb on - strand, within Atu0209 at 214.750 kb on + strand, within Atu0209 at 214.753 kb on - strand, within Atu0209 at 214.760 kb on - strand, within Atu0209 at 214.771 kb on + strand, within Atu0209 at 214.779 kb on - strand at 214.796 kb on + strand at 214.804 kb on - strand at 214.883 kb on - strand at 215.076 kb on - strand at 215.088 kb on + strand at 215.088 kb on + strand at 215.096 kb on - strand at 215.096 kb on - strand at 215.130 kb on - strand at 215.147 kb on + strand at 215.154 kb on + strand at 215.155 kb on - strand at 215.155 kb on - strand at 215.155 kb on - strand at 215.162 kb on - strand at 215.186 kb on + strand at 215.190 kb on + strand at 215.214 kb on + strand at 215.236 kb on + strand at 215.249 kb on - strand at 215.287 kb on - strand at 215.289 kb on - strand, within Atu0210 at 215.298 kb on + strand, within Atu0210 at 215.310 kb on + strand, within Atu0210 at 215.315 kb on + strand, within Atu0210 at 215.333 kb on + strand, within Atu0210 at 215.334 kb on + strand, within Atu0210 at 215.342 kb on - strand, within Atu0210 at 215.451 kb on + strand, within Atu0210 at 215.458 kb on + strand, within Atu0210 at 215.466 kb on - strand, within Atu0210 at 215.620 kb on - strand at 215.640 kb on - strand at 215.650 kb on - strand at 215.652 kb on + strand at 215.655 kb on - strand at 215.677 kb on + strand at 215.685 kb on - strand at 215.685 kb on - strand at 215.720 kb on + strand, within Atu0211 at 215.732 kb on + strand, within Atu0211 at 215.769 kb on + strand, within Atu0211 at 215.781 kb on + strand, within Atu0211 at 215.786 kb on + strand, within Atu0211 at 215.855 kb on - strand, within Atu0211 at 215.918 kb on - strand, within Atu0211 at 215.918 kb on - strand, within Atu0211 at 215.936 kb on + strand, within Atu0211 at 215.944 kb on - strand, within Atu0211 at 215.989 kb on - strand, within Atu0211 at 215.990 kb on - strand, within Atu0211 at 216.039 kb on - strand, within Atu0211 at 216.062 kb on + strand, within Atu0211 at 216.157 kb on - strand, within Atu0211 at 216.236 kb on - strand, within Atu0211 at 216.497 kb on - strand at 216.515 kb on + strand at 216.533 kb on - strand at 216.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 214,296 - Atu0209 0.46 -1.1 214,312 - Atu0209 0.48 +1.1 214,388 + Atu0209 0.55 +0.4 214,427 + Atu0209 0.58 +1.2 214,435 - Atu0209 0.59 +0.3 214,435 - Atu0209 0.59 -0.1 214,492 - Atu0209 0.64 -0.1 214,562 + Atu0209 0.70 -1.9 214,586 + Atu0209 0.73 -0.1 214,594 - Atu0209 0.73 -1.7 214,666 + Atu0209 0.80 -0.9 214,676 - Atu0209 0.81 +0.4 214,700 - Atu0209 0.83 +0.3 214,700 - Atu0209 0.83 +1.1 214,718 + Atu0209 0.85 +0.0 214,718 + Atu0209 0.85 -1.1 214,726 - Atu0209 0.85 +1.1 214,726 - Atu0209 0.85 -0.1 214,750 + Atu0209 0.87 -0.2 214,753 - Atu0209 0.88 -0.5 214,760 - Atu0209 0.88 +0.4 214,771 + Atu0209 0.89 +0.6 214,779 - -0.2 214,796 + -0.2 214,804 - +0.5 214,883 - +0.3 215,076 - -0.9 215,088 + -0.3 215,088 + +0.7 215,096 - -1.1 215,096 - -0.6 215,130 - +0.2 215,147 + -0.9 215,154 + +1.3 215,155 - +0.5 215,155 - +0.4 215,155 - +2.4 215,162 - +0.4 215,186 + +0.5 215,190 + +0.4 215,214 + +0.1 215,236 + -2.7 215,249 - -0.8 215,287 - +1.6 215,289 - Atu0210 0.10 +0.7 215,298 + Atu0210 0.13 -1.0 215,310 + Atu0210 0.17 +1.5 215,315 + Atu0210 0.18 +0.7 215,333 + Atu0210 0.23 +0.3 215,334 + Atu0210 0.23 +2.7 215,342 - Atu0210 0.26 +0.2 215,451 + Atu0210 0.57 +1.1 215,458 + Atu0210 0.59 +1.2 215,466 - Atu0210 0.62 +1.1 215,620 - -0.6 215,640 - -1.6 215,650 - -2.7 215,652 + -2.2 215,655 - -2.8 215,677 + -3.2 215,685 - -4.5 215,685 - -0.7 215,720 + Atu0211 0.12 -1.6 215,732 + Atu0211 0.14 -3.1 215,769 + Atu0211 0.18 -2.0 215,781 + Atu0211 0.19 -3.0 215,786 + Atu0211 0.20 -2.0 215,855 - Atu0211 0.28 -2.3 215,918 - Atu0211 0.35 -1.0 215,918 - Atu0211 0.35 +0.4 215,936 + Atu0211 0.38 -1.4 215,944 - Atu0211 0.38 -3.1 215,989 - Atu0211 0.44 -1.5 215,990 - Atu0211 0.44 -2.3 216,039 - Atu0211 0.50 -1.5 216,062 + Atu0211 0.52 -2.5 216,157 - Atu0211 0.63 -2.7 216,236 - Atu0211 0.73 -1.7 216,497 - +0.5 216,515 + -0.1 216,533 - -0.8 216,533 - +0.7
Or see this region's nucleotide sequence