Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0133 and Atu0134 overlap by 8 nucleotides Atu0134 and Atu0135 are separated by 119 nucleotides Atu0135 and Atu0136 are separated by 95 nucleotides
Atu0133: Atu0133 - thymidine phosphorylase, at 136,629 to 137,945
Atu0133
Atu0134: Atu0134 - hypothetical protein, at 137,938 to 138,474
Atu0134
Atu0135: Atu0135 - uracil phosphoribosyltransferase, at 138,594 to 139,223
Atu0135
Atu0136: Atu0136 - adenosine deaminase, at 139,319 to 140,296
Atu0136
Position (kb) 137
138
139 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 137.032 kb on + strand, within Atu0133 at 137.123 kb on + strand, within Atu0133 at 137.263 kb on + strand, within Atu0133 at 137.263 kb on + strand, within Atu0133 at 137.334 kb on + strand, within Atu0133 at 137.419 kb on + strand, within Atu0133 at 137.436 kb on + strand, within Atu0133 at 137.451 kb on + strand, within Atu0133 at 137.451 kb on + strand, within Atu0133 at 137.530 kb on - strand, within Atu0133 at 137.661 kb on + strand, within Atu0133 at 137.794 kb on + strand, within Atu0133 at 137.794 kb on + strand, within Atu0133 at 137.794 kb on + strand, within Atu0133 at 137.794 kb on + strand, within Atu0133 at 137.804 kb on + strand, within Atu0133 at 137.808 kb on - strand, within Atu0133 at 137.808 kb on - strand, within Atu0133 at 137.810 kb on - strand, within Atu0133 at 137.838 kb on + strand at 137.864 kb on + strand at 137.892 kb on - strand at 138.088 kb on + strand, within Atu0134 at 138.112 kb on + strand, within Atu0134 at 138.164 kb on + strand, within Atu0134 at 138.299 kb on + strand, within Atu0134 at 138.475 kb on + strand at 138.482 kb on + strand at 138.482 kb on + strand at 138.482 kb on + strand at 138.482 kb on + strand at 138.482 kb on + strand at 138.482 kb on + strand at 138.483 kb on - strand at 138.490 kb on - strand at 138.490 kb on - strand at 138.490 kb on - strand at 138.490 kb on - strand at 138.490 kb on - strand at 138.490 kb on - strand at 138.580 kb on - strand at 138.983 kb on - strand, within Atu0135 at 139.089 kb on + strand, within Atu0135 at 139.306 kb on + strand at 139.335 kb on + strand at 139.426 kb on - strand, within Atu0136 at 139.452 kb on - strand, within Atu0136
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 137,032 + Atu0133 0.31 -2.5 137,123 + Atu0133 0.38 -0.1 137,263 + Atu0133 0.48 +0.3 137,263 + Atu0133 0.48 +1.4 137,334 + Atu0133 0.54 -0.4 137,419 + Atu0133 0.60 -2.4 137,436 + Atu0133 0.61 +0.8 137,451 + Atu0133 0.62 +0.0 137,451 + Atu0133 0.62 +0.1 137,530 - Atu0133 0.68 +0.1 137,661 + Atu0133 0.78 -0.9 137,794 + Atu0133 0.88 +0.4 137,794 + Atu0133 0.88 +1.1 137,794 + Atu0133 0.88 +1.8 137,794 + Atu0133 0.88 +0.3 137,804 + Atu0133 0.89 +0.3 137,808 - Atu0133 0.90 +0.5 137,808 - Atu0133 0.90 -0.8 137,810 - Atu0133 0.90 -0.1 137,838 + -1.3 137,864 + +0.4 137,892 - +0.9 138,088 + Atu0134 0.28 -0.2 138,112 + Atu0134 0.32 +2.1 138,164 + Atu0134 0.42 +0.6 138,299 + Atu0134 0.67 -0.6 138,475 + +1.4 138,482 + -2.0 138,482 + +2.5 138,482 + -0.1 138,482 + -0.9 138,482 + +0.6 138,482 + +0.2 138,483 - -0.4 138,490 - +0.4 138,490 - -0.0 138,490 - +1.9 138,490 - +2.2 138,490 - +0.7 138,490 - -0.0 138,580 - -1.7 138,983 - Atu0135 0.62 -0.1 139,089 + Atu0135 0.79 +0.0 139,306 + +0.4 139,335 + -0.7 139,426 - Atu0136 0.11 +0.3 139,452 - Atu0136 0.14 +2.8
Or see this region's nucleotide sequence