Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5523 and Atu5524 are separated by 1 nucleotides Atu5524 and Atu5525 overlap by 1 nucleotides Atu5525 and Atu5526 are separated by 108 nucleotides
Atu5523: Atu5523 - ABC transporter membrane spanning protein (branched chain amino acid), at 515,117 to 516,211
Atu5523
Atu5524: Atu5524 - ABC transporter membrane spanning protein (branched chain amino acid), at 516,213 to 517,109
Atu5524
Atu5525: Atu5525 - ABC transporter nucleotide binding/ATPase (branched chain amino acid), at 517,109 to 518,026
Atu5525
Atu5526: Atu5526 - monooxygenase, at 518,135 to 519,238
Atu5526
Position (kb) 517
518
519 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 516.143 kb on + strand at 516.164 kb on + strand at 516.211 kb on + strand at 516.219 kb on - strand at 516.219 kb on - strand at 516.243 kb on - strand at 516.253 kb on - strand at 516.298 kb on + strand at 516.328 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.475 kb on + strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.483 kb on - strand, within Atu5524 at 516.530 kb on + strand, within Atu5524 at 516.530 kb on + strand, within Atu5524 at 516.530 kb on + strand, within Atu5524 at 516.538 kb on - strand, within Atu5524 at 516.565 kb on + strand, within Atu5524 at 516.687 kb on + strand, within Atu5524 at 516.687 kb on + strand, within Atu5524 at 516.762 kb on - strand, within Atu5524 at 516.767 kb on + strand, within Atu5524 at 516.775 kb on + strand, within Atu5524 at 516.805 kb on + strand, within Atu5524 at 516.805 kb on + strand, within Atu5524 at 516.805 kb on + strand, within Atu5524 at 516.805 kb on + strand, within Atu5524 at 516.805 kb on + strand, within Atu5524 at 516.813 kb on - strand, within Atu5524 at 516.813 kb on - strand, within Atu5524 at 516.813 kb on - strand, within Atu5524 at 516.813 kb on - strand, within Atu5524 at 516.859 kb on - strand, within Atu5524 at 516.926 kb on - strand, within Atu5524 at 516.955 kb on + strand, within Atu5524 at 517.011 kb on - strand, within Atu5524 at 517.014 kb on - strand, within Atu5524 at 517.036 kb on + strand at 517.048 kb on + strand at 517.076 kb on - strand at 517.199 kb on - strand at 517.228 kb on + strand, within Atu5525 at 517.228 kb on + strand, within Atu5525 at 517.247 kb on + strand, within Atu5525 at 517.258 kb on + strand, within Atu5525 at 517.258 kb on + strand, within Atu5525 at 517.266 kb on - strand, within Atu5525 at 517.269 kb on + strand, within Atu5525 at 517.287 kb on - strand, within Atu5525 at 517.337 kb on - strand, within Atu5525 at 517.390 kb on + strand, within Atu5525 at 517.390 kb on + strand, within Atu5525 at 517.422 kb on - strand, within Atu5525 at 517.434 kb on + strand, within Atu5525 at 517.442 kb on - strand, within Atu5525 at 517.581 kb on + strand, within Atu5525 at 517.581 kb on + strand, within Atu5525 at 517.581 kb on + strand, within Atu5525 at 517.589 kb on - strand, within Atu5525 at 517.623 kb on + strand, within Atu5525 at 517.623 kb on + strand, within Atu5525 at 517.623 kb on + strand, within Atu5525 at 517.623 kb on + strand, within Atu5525 at 517.623 kb on + strand, within Atu5525 at 517.623 kb on + strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.631 kb on - strand, within Atu5525 at 517.641 kb on - strand, within Atu5525 at 517.791 kb on - strand, within Atu5525 at 517.835 kb on + strand, within Atu5525 at 517.835 kb on + strand, within Atu5525 at 517.843 kb on - strand, within Atu5525 at 517.882 kb on + strand, within Atu5525 at 517.882 kb on + strand, within Atu5525 at 517.910 kb on - strand, within Atu5525 at 517.919 kb on + strand, within Atu5525 at 518.112 kb on - strand at 518.160 kb on + strand at 518.240 kb on + strand at 518.240 kb on + strand at 518.248 kb on - strand, within Atu5526 at 518.248 kb on - strand, within Atu5526 at 518.270 kb on + strand, within Atu5526 at 518.307 kb on + strand, within Atu5526 at 518.317 kb on + strand, within Atu5526 at 518.320 kb on - strand, within Atu5526 at 518.320 kb on - strand, within Atu5526 at 518.325 kb on - strand, within Atu5526 at 518.430 kb on + strand, within Atu5526 at 518.438 kb on - strand, within Atu5526 at 518.478 kb on + strand, within Atu5526 at 518.486 kb on - strand, within Atu5526 at 518.486 kb on - strand, within Atu5526 at 518.518 kb on - strand, within Atu5526 at 518.536 kb on - strand, within Atu5526 at 518.536 kb on - strand, within Atu5526 at 518.550 kb on + strand, within Atu5526 at 518.567 kb on + strand, within Atu5526 at 518.585 kb on + strand, within Atu5526 at 518.593 kb on + strand, within Atu5526 at 518.601 kb on - strand, within Atu5526 at 518.601 kb on - strand, within Atu5526 at 518.653 kb on - strand, within Atu5526 at 518.694 kb on - strand, within Atu5526 at 518.709 kb on - strand, within Atu5526 at 518.709 kb on - strand, within Atu5526 at 518.805 kb on + strand, within Atu5526 at 518.805 kb on - strand, within Atu5526 at 518.834 kb on + strand, within Atu5526 at 518.909 kb on - strand, within Atu5526 at 518.937 kb on - strand, within Atu5526 at 518.964 kb on - strand, within Atu5526 at 518.973 kb on + strand, within Atu5526 at 518.973 kb on - strand, within Atu5526
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 516,143 + +1.3 516,164 + -0.7 516,211 + -0.4 516,219 - -0.7 516,219 - +0.8 516,243 - +1.4 516,253 - -0.6 516,298 + -0.7 516,328 + Atu5524 0.13 -0.8 516,475 + Atu5524 0.29 -0.4 516,475 + Atu5524 0.29 +0.3 516,475 + Atu5524 0.29 -2.1 516,475 + Atu5524 0.29 -1.4 516,475 + Atu5524 0.29 -2.0 516,475 + Atu5524 0.29 -0.5 516,475 + Atu5524 0.29 -0.9 516,475 + Atu5524 0.29 +0.3 516,475 + Atu5524 0.29 +0.8 516,475 + Atu5524 0.29 +1.2 516,475 + Atu5524 0.29 +0.9 516,475 + Atu5524 0.29 +1.9 516,475 + Atu5524 0.29 -0.9 516,475 + Atu5524 0.29 +2.2 516,475 + Atu5524 0.29 -0.9 516,483 - Atu5524 0.30 -1.2 516,483 - Atu5524 0.30 +0.8 516,483 - Atu5524 0.30 +0.9 516,483 - Atu5524 0.30 -1.2 516,483 - Atu5524 0.30 -0.9 516,483 - Atu5524 0.30 -1.2 516,483 - Atu5524 0.30 -1.9 516,483 - Atu5524 0.30 +0.3 516,483 - Atu5524 0.30 +0.7 516,483 - Atu5524 0.30 -0.1 516,483 - Atu5524 0.30 -0.2 516,483 - Atu5524 0.30 -1.2 516,483 - Atu5524 0.30 +0.0 516,483 - Atu5524 0.30 +0.5 516,530 + Atu5524 0.35 -0.4 516,530 + Atu5524 0.35 +2.2 516,530 + Atu5524 0.35 +1.0 516,538 - Atu5524 0.36 -0.0 516,565 + Atu5524 0.39 -0.9 516,687 + Atu5524 0.53 +0.3 516,687 + Atu5524 0.53 -0.1 516,762 - Atu5524 0.61 +3.1 516,767 + Atu5524 0.62 -0.7 516,775 + Atu5524 0.63 -0.0 516,805 + Atu5524 0.66 +0.3 516,805 + Atu5524 0.66 -1.0 516,805 + Atu5524 0.66 +1.4 516,805 + Atu5524 0.66 +0.1 516,805 + Atu5524 0.66 +0.3 516,813 - Atu5524 0.67 -0.7 516,813 - Atu5524 0.67 +4.4 516,813 - Atu5524 0.67 +0.5 516,813 - Atu5524 0.67 -0.2 516,859 - Atu5524 0.72 +1.1 516,926 - Atu5524 0.79 -0.3 516,955 + Atu5524 0.83 -0.6 517,011 - Atu5524 0.89 +0.3 517,014 - Atu5524 0.89 +1.7 517,036 + -0.8 517,048 + -1.0 517,076 - -0.6 517,199 - +0.8 517,228 + Atu5525 0.13 +0.4 517,228 + Atu5525 0.13 -0.0 517,247 + Atu5525 0.15 +0.5 517,258 + Atu5525 0.16 -0.2 517,258 + Atu5525 0.16 +0.4 517,266 - Atu5525 0.17 +0.0 517,269 + Atu5525 0.17 -1.0 517,287 - Atu5525 0.19 -1.6 517,337 - Atu5525 0.25 +0.0 517,390 + Atu5525 0.31 -0.1 517,390 + Atu5525 0.31 -0.4 517,422 - Atu5525 0.34 -1.0 517,434 + Atu5525 0.35 -1.4 517,442 - Atu5525 0.36 +0.5 517,581 + Atu5525 0.51 -0.2 517,581 + Atu5525 0.51 -0.8 517,581 + Atu5525 0.51 -0.1 517,589 - Atu5525 0.52 +0.6 517,623 + Atu5525 0.56 -2.6 517,623 + Atu5525 0.56 -0.3 517,623 + Atu5525 0.56 -1.5 517,623 + Atu5525 0.56 -0.7 517,623 + Atu5525 0.56 -1.1 517,623 + Atu5525 0.56 +0.6 517,631 - Atu5525 0.57 -0.1 517,631 - Atu5525 0.57 -2.0 517,631 - Atu5525 0.57 -0.1 517,631 - Atu5525 0.57 +0.1 517,631 - Atu5525 0.57 +0.7 517,631 - Atu5525 0.57 -0.1 517,631 - Atu5525 0.57 -2.5 517,641 - Atu5525 0.58 +0.8 517,791 - Atu5525 0.74 -0.5 517,835 + Atu5525 0.79 +0.4 517,835 + Atu5525 0.79 +0.7 517,843 - Atu5525 0.80 +1.0 517,882 + Atu5525 0.84 +4.4 517,882 + Atu5525 0.84 -0.2 517,910 - Atu5525 0.87 +0.3 517,919 + Atu5525 0.88 -2.3 518,112 - -1.1 518,160 + +0.7 518,240 + -0.8 518,240 + -0.2 518,248 - Atu5526 0.10 +0.8 518,248 - Atu5526 0.10 -0.7 518,270 + Atu5526 0.12 +1.5 518,307 + Atu5526 0.16 +0.6 518,317 + Atu5526 0.16 +1.7 518,320 - Atu5526 0.17 -0.8 518,320 - Atu5526 0.17 +0.7 518,325 - Atu5526 0.17 +0.4 518,430 + Atu5526 0.27 +0.6 518,438 - Atu5526 0.27 +0.3 518,478 + Atu5526 0.31 -1.0 518,486 - Atu5526 0.32 +0.7 518,486 - Atu5526 0.32 +1.5 518,518 - Atu5526 0.35 +0.5 518,536 - Atu5526 0.36 -1.3 518,536 - Atu5526 0.36 +0.4 518,550 + Atu5526 0.38 -0.6 518,567 + Atu5526 0.39 -2.6 518,585 + Atu5526 0.41 -0.7 518,593 + Atu5526 0.41 -0.5 518,601 - Atu5526 0.42 -1.0 518,601 - Atu5526 0.42 -0.5 518,653 - Atu5526 0.47 +1.1 518,694 - Atu5526 0.51 -0.5 518,709 - Atu5526 0.52 -1.0 518,709 - Atu5526 0.52 +0.6 518,805 + Atu5526 0.61 -0.4 518,805 - Atu5526 0.61 +1.1 518,834 + Atu5526 0.63 +0.4 518,909 - Atu5526 0.70 -1.1 518,937 - Atu5526 0.73 -0.9 518,964 - Atu5526 0.75 -1.1 518,973 + Atu5526 0.76 +0.2 518,973 - Atu5526 0.76 -0.3
Or see this region's nucleotide sequence