Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5490 and Atu8052 are separated by 191 nucleotides Atu8052 and Atu5491 are separated by 40 nucleotides Atu5491 and Atu5492 are separated by 76 nucleotides Atu5492 and Atu5493 are separated by 24 nucleotides
Atu5490: Atu5490 - ECF family RNA polymerase sigma factor, at 479,424 to 479,966
Atu5490
Atu8052: Atu8052 - hypothetical protein, at 480,158 to 480,295
Atu8052
Atu5491: Atu5491 - catalase C, at 480,336 to 482,477
Atu5491
Atu5492: Atu5492 - hypothetical protein, at 482,554 to 483,156
Atu5492
Atu5493: Atu5493 - hypothetical protein, at 483,181 to 483,498
Atu5493
Position (kb) 480
481
482
483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 479.434 kb on + strand at 479.442 kb on - strand at 479.476 kb on - strand at 479.608 kb on + strand, within Atu5490 at 479.617 kb on - strand, within Atu5490 at 479.624 kb on - strand, within Atu5490 at 479.627 kb on - strand, within Atu5490 at 479.644 kb on + strand, within Atu5490 at 479.660 kb on + strand, within Atu5490 at 479.660 kb on + strand, within Atu5490 at 479.668 kb on - strand, within Atu5490 at 479.668 kb on - strand, within Atu5490 at 479.668 kb on - strand, within Atu5490 at 479.668 kb on - strand, within Atu5490 at 479.668 kb on - strand, within Atu5490 at 479.702 kb on + strand, within Atu5490 at 479.716 kb on - strand, within Atu5490 at 479.723 kb on - strand, within Atu5490 at 479.775 kb on + strand, within Atu5490 at 479.778 kb on - strand, within Atu5490 at 479.786 kb on + strand, within Atu5490 at 479.808 kb on + strand, within Atu5490 at 479.905 kb on + strand, within Atu5490 at 479.931 kb on + strand at 480.015 kb on + strand at 480.066 kb on - strand at 480.066 kb on - strand at 480.224 kb on + strand, within Atu8052 at 480.242 kb on + strand, within Atu8052 at 480.310 kb on + strand at 480.315 kb on + strand at 480.389 kb on - strand at 480.428 kb on + strand at 480.436 kb on - strand at 480.436 kb on - strand at 480.448 kb on + strand at 480.504 kb on + strand at 480.512 kb on - strand at 480.598 kb on - strand, within Atu5491 at 480.598 kb on - strand, within Atu5491 at 480.598 kb on - strand, within Atu5491 at 480.605 kb on + strand, within Atu5491 at 480.613 kb on - strand, within Atu5491 at 480.613 kb on - strand, within Atu5491 at 480.618 kb on - strand, within Atu5491 at 480.647 kb on - strand, within Atu5491 at 480.734 kb on - strand, within Atu5491 at 480.759 kb on + strand, within Atu5491 at 480.762 kb on - strand, within Atu5491 at 480.767 kb on - strand, within Atu5491 at 480.784 kb on - strand, within Atu5491 at 481.017 kb on - strand, within Atu5491 at 481.032 kb on + strand, within Atu5491 at 481.086 kb on - strand, within Atu5491 at 481.344 kb on - strand, within Atu5491 at 481.466 kb on + strand, within Atu5491 at 481.694 kb on + strand, within Atu5491 at 481.731 kb on - strand, within Atu5491 at 481.766 kb on + strand, within Atu5491 at 481.766 kb on + strand, within Atu5491 at 481.766 kb on + strand, within Atu5491 at 481.766 kb on + strand, within Atu5491 at 481.766 kb on + strand, within Atu5491 at 481.828 kb on + strand, within Atu5491 at 481.856 kb on - strand, within Atu5491 at 482.012 kb on - strand, within Atu5491 at 482.024 kb on + strand, within Atu5491 at 482.029 kb on + strand, within Atu5491 at 482.029 kb on + strand, within Atu5491 at 482.032 kb on - strand, within Atu5491 at 482.032 kb on - strand, within Atu5491 at 482.057 kb on + strand, within Atu5491 at 482.115 kb on + strand, within Atu5491 at 482.115 kb on + strand, within Atu5491 at 482.122 kb on + strand, within Atu5491 at 482.164 kb on - strand, within Atu5491 at 482.346 kb on + strand at 482.346 kb on + strand at 482.354 kb on - strand at 482.598 kb on + strand at 482.608 kb on + strand at 482.646 kb on + strand, within Atu5492 at 482.646 kb on + strand, within Atu5492 at 482.660 kb on + strand, within Atu5492 at 482.764 kb on + strand, within Atu5492 at 482.805 kb on + strand, within Atu5492 at 482.822 kb on + strand, within Atu5492 at 482.830 kb on - strand, within Atu5492 at 482.858 kb on + strand, within Atu5492 at 482.957 kb on + strand, within Atu5492 at 482.968 kb on + strand, within Atu5492 at 482.968 kb on + strand, within Atu5492 at 482.976 kb on - strand, within Atu5492 at 482.976 kb on - strand, within Atu5492 at 482.976 kb on - strand, within Atu5492 at 482.976 kb on - strand, within Atu5492 at 483.105 kb on + strand at 483.202 kb on - strand at 483.249 kb on + strand, within Atu5493 at 483.257 kb on - strand, within Atu5493 at 483.271 kb on - strand, within Atu5493 at 483.284 kb on + strand, within Atu5493 at 483.294 kb on + strand, within Atu5493 at 483.294 kb on + strand, within Atu5493 at 483.406 kb on - strand, within Atu5493
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 479,434 + +0.8 479,442 - -0.5 479,476 - +1.8 479,608 + Atu5490 0.34 -0.7 479,617 - Atu5490 0.36 -0.3 479,624 - Atu5490 0.37 -1.9 479,627 - Atu5490 0.37 +0.6 479,644 + Atu5490 0.41 -0.6 479,660 + Atu5490 0.43 -0.5 479,660 + Atu5490 0.43 -2.4 479,668 - Atu5490 0.45 +0.5 479,668 - Atu5490 0.45 -0.4 479,668 - Atu5490 0.45 +0.5 479,668 - Atu5490 0.45 +0.3 479,668 - Atu5490 0.45 -0.0 479,702 + Atu5490 0.51 -0.5 479,716 - Atu5490 0.54 -0.9 479,723 - Atu5490 0.55 +1.7 479,775 + Atu5490 0.65 -0.6 479,778 - Atu5490 0.65 -0.5 479,786 + Atu5490 0.67 +0.2 479,808 + Atu5490 0.71 +1.1 479,905 + Atu5490 0.89 -0.4 479,931 + -2.0 480,015 + +0.6 480,066 - +0.0 480,066 - -1.1 480,224 + Atu8052 0.48 +0.0 480,242 + Atu8052 0.61 +0.5 480,310 + -0.2 480,315 + -1.1 480,389 - -1.0 480,428 + -0.0 480,436 - -3.2 480,436 - -1.5 480,448 + -1.5 480,504 + +0.2 480,512 - +0.0 480,598 - Atu5491 0.12 +0.3 480,598 - Atu5491 0.12 +1.3 480,598 - Atu5491 0.12 +0.8 480,605 + Atu5491 0.13 -0.7 480,613 - Atu5491 0.13 +0.7 480,613 - Atu5491 0.13 +1.4 480,618 - Atu5491 0.13 +1.3 480,647 - Atu5491 0.15 -1.4 480,734 - Atu5491 0.19 +0.7 480,759 + Atu5491 0.20 -1.0 480,762 - Atu5491 0.20 +0.1 480,767 - Atu5491 0.20 +0.3 480,784 - Atu5491 0.21 -0.1 481,017 - Atu5491 0.32 -2.2 481,032 + Atu5491 0.32 +1.1 481,086 - Atu5491 0.35 +0.1 481,344 - Atu5491 0.47 -0.4 481,466 + Atu5491 0.53 +0.0 481,694 + Atu5491 0.63 +0.4 481,731 - Atu5491 0.65 -1.1 481,766 + Atu5491 0.67 +0.3 481,766 + Atu5491 0.67 +0.5 481,766 + Atu5491 0.67 +2.8 481,766 + Atu5491 0.67 +0.0 481,766 + Atu5491 0.67 +0.4 481,828 + Atu5491 0.70 -0.8 481,856 - Atu5491 0.71 +0.4 482,012 - Atu5491 0.78 +3.6 482,024 + Atu5491 0.79 -0.7 482,029 + Atu5491 0.79 +0.0 482,029 + Atu5491 0.79 -1.7 482,032 - Atu5491 0.79 +1.3 482,032 - Atu5491 0.79 +0.4 482,057 + Atu5491 0.80 +0.3 482,115 + Atu5491 0.83 +0.3 482,115 + Atu5491 0.83 -0.2 482,122 + Atu5491 0.83 -0.5 482,164 - Atu5491 0.85 -0.3 482,346 + +1.7 482,346 + -0.9 482,354 - +0.5 482,598 + -0.6 482,608 + -0.7 482,646 + Atu5492 0.15 +1.3 482,646 + Atu5492 0.15 -0.8 482,660 + Atu5492 0.18 +0.5 482,764 + Atu5492 0.35 +3.3 482,805 + Atu5492 0.42 -0.1 482,822 + Atu5492 0.44 +0.5 482,830 - Atu5492 0.46 +0.5 482,858 + Atu5492 0.50 -1.9 482,957 + Atu5492 0.67 -1.6 482,968 + Atu5492 0.69 -3.9 482,968 + Atu5492 0.69 -0.2 482,976 - Atu5492 0.70 -2.1 482,976 - Atu5492 0.70 -0.4 482,976 - Atu5492 0.70 +0.2 482,976 - Atu5492 0.70 -0.9 483,105 + +0.1 483,202 - +0.2 483,249 + Atu5493 0.21 -0.1 483,257 - Atu5493 0.24 -1.2 483,271 - Atu5493 0.28 -1.6 483,284 + Atu5493 0.32 +1.5 483,294 + Atu5493 0.36 +2.2 483,294 + Atu5493 0.36 +0.4 483,406 - Atu5493 0.71 -1.0
Or see this region's nucleotide sequence