Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5187 and Atu5188 are separated by 194 nucleotides Atu5188 and Atu5189 overlap by 4 nucleotides Atu5189 and Atu5190 are separated by 114 nucleotides
Atu5187: Atu5187 - LysR family transcriptional regulator, at 182,976 to 183,902
Atu5187
Atu5188: Atu5188 - zinc-binding dehydrogenase, at 184,097 to 185,083
Atu5188
Atu5189: Atu5189 - hypothetical protein, at 185,080 to 185,412
Atu5189
Atu5190: Atu5190 - hypothetical protein, at 185,527 to 186,249
Atu5190
Position (kb) 184
185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 183.113 kb on + strand, within Atu5187 at 183.124 kb on - strand, within Atu5187 at 183.195 kb on + strand, within Atu5187 at 183.236 kb on + strand, within Atu5187 at 183.236 kb on + strand, within Atu5187 at 183.238 kb on + strand, within Atu5187 at 183.244 kb on - strand, within Atu5187 at 183.246 kb on - strand, within Atu5187 at 183.345 kb on - strand, within Atu5187 at 183.469 kb on + strand, within Atu5187 at 183.469 kb on + strand, within Atu5187 at 183.471 kb on + strand, within Atu5187 at 183.472 kb on - strand, within Atu5187 at 183.472 kb on - strand, within Atu5187 at 183.509 kb on + strand, within Atu5187 at 183.554 kb on - strand, within Atu5187 at 183.567 kb on - strand, within Atu5187 at 183.630 kb on + strand, within Atu5187 at 183.714 kb on + strand, within Atu5187 at 183.800 kb on - strand, within Atu5187 at 183.824 kb on + strand at 183.839 kb on + strand at 183.839 kb on + strand at 183.860 kb on + strand at 183.866 kb on - strand at 183.881 kb on + strand at 184.128 kb on + strand at 184.128 kb on + strand at 184.136 kb on - strand at 184.137 kb on + strand at 184.203 kb on - strand, within Atu5188 at 184.203 kb on - strand, within Atu5188 at 184.281 kb on + strand, within Atu5188 at 184.297 kb on - strand, within Atu5188 at 184.361 kb on + strand, within Atu5188 at 184.369 kb on - strand, within Atu5188 at 184.514 kb on + strand, within Atu5188 at 184.522 kb on - strand, within Atu5188 at 184.522 kb on - strand, within Atu5188 at 184.522 kb on - strand, within Atu5188 at 184.522 kb on - strand, within Atu5188 at 184.568 kb on - strand, within Atu5188 at 184.599 kb on + strand, within Atu5188 at 184.606 kb on + strand, within Atu5188 at 184.607 kb on - strand, within Atu5188 at 184.607 kb on - strand, within Atu5188 at 184.736 kb on - strand, within Atu5188 at 184.764 kb on + strand, within Atu5188 at 184.784 kb on - strand, within Atu5188 at 184.784 kb on - strand, within Atu5188 at 184.897 kb on - strand, within Atu5188 at 184.897 kb on - strand, within Atu5188 at 185.000 kb on - strand at 185.064 kb on + strand at 185.093 kb on + strand at 185.130 kb on + strand, within Atu5189 at 185.161 kb on - strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.169 kb on - strand, within Atu5189 at 185.171 kb on - strand, within Atu5189 at 185.178 kb on + strand, within Atu5189 at 185.221 kb on + strand, within Atu5189 at 185.235 kb on + strand, within Atu5189 at 185.243 kb on - strand, within Atu5189 at 185.291 kb on + strand, within Atu5189 at 185.314 kb on + strand, within Atu5189 at 185.415 kb on - strand at 185.415 kb on - strand at 185.461 kb on + strand at 185.531 kb on + strand at 185.536 kb on + strand at 185.539 kb on - strand at 185.544 kb on - strand at 185.579 kb on - strand at 185.660 kb on + strand, within Atu5190 at 185.728 kb on - strand, within Atu5190 at 185.751 kb on + strand, within Atu5190 at 185.765 kb on + strand, within Atu5190 at 185.841 kb on + strand, within Atu5190 at 185.864 kb on - strand, within Atu5190 at 185.875 kb on - strand, within Atu5190 at 185.888 kb on + strand, within Atu5190 at 186.020 kb on - strand, within Atu5190 at 186.057 kb on + strand, within Atu5190 at 186.060 kb on - strand, within Atu5190 at 186.060 kb on - strand, within Atu5190
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 183,113 + Atu5187 0.15 +0.7 183,124 - Atu5187 0.16 +0.9 183,195 + Atu5187 0.24 -0.2 183,236 + Atu5187 0.28 +1.1 183,236 + Atu5187 0.28 -1.9 183,238 + Atu5187 0.28 +0.7 183,244 - Atu5187 0.29 -2.1 183,246 - Atu5187 0.29 -1.6 183,345 - Atu5187 0.40 +2.0 183,469 + Atu5187 0.53 -0.1 183,469 + Atu5187 0.53 -0.6 183,471 + Atu5187 0.53 -1.2 183,472 - Atu5187 0.54 +1.6 183,472 - Atu5187 0.54 +0.3 183,509 + Atu5187 0.57 -1.3 183,554 - Atu5187 0.62 -1.6 183,567 - Atu5187 0.64 +3.3 183,630 + Atu5187 0.71 +1.3 183,714 + Atu5187 0.80 +0.2 183,800 - Atu5187 0.89 +0.5 183,824 + +0.6 183,839 + +0.6 183,839 + -0.4 183,860 + +0.8 183,866 - +0.9 183,881 + -0.7 184,128 + +0.3 184,128 + -0.0 184,136 - -1.6 184,137 + -0.0 184,203 - Atu5188 0.11 +0.4 184,203 - Atu5188 0.11 -0.7 184,281 + Atu5188 0.19 -0.3 184,297 - Atu5188 0.20 +0.4 184,361 + Atu5188 0.27 -0.3 184,369 - Atu5188 0.28 -1.5 184,514 + Atu5188 0.42 -0.0 184,522 - Atu5188 0.43 -0.9 184,522 - Atu5188 0.43 +1.5 184,522 - Atu5188 0.43 -0.2 184,522 - Atu5188 0.43 -2.8 184,568 - Atu5188 0.48 -1.4 184,599 + Atu5188 0.51 -0.1 184,606 + Atu5188 0.52 +1.1 184,607 - Atu5188 0.52 -2.0 184,607 - Atu5188 0.52 -0.7 184,736 - Atu5188 0.65 -0.9 184,764 + Atu5188 0.68 +0.0 184,784 - Atu5188 0.70 -0.7 184,784 - Atu5188 0.70 +0.5 184,897 - Atu5188 0.81 -1.2 184,897 - Atu5188 0.81 +0.1 185,000 - -0.0 185,064 + +0.7 185,093 + -0.5 185,130 + Atu5189 0.15 -0.9 185,161 - Atu5189 0.24 +0.5 185,163 + Atu5189 0.25 +1.2 185,163 + Atu5189 0.25 -0.6 185,163 + Atu5189 0.25 +2.0 185,163 + Atu5189 0.25 +0.1 185,163 + Atu5189 0.25 -0.1 185,169 - Atu5189 0.27 +1.3 185,171 - Atu5189 0.27 +0.7 185,178 + Atu5189 0.29 -0.2 185,221 + Atu5189 0.42 +0.0 185,235 + Atu5189 0.47 +1.1 185,243 - Atu5189 0.49 +0.3 185,291 + Atu5189 0.63 -0.3 185,314 + Atu5189 0.70 +0.2 185,415 - +1.0 185,415 - -1.8 185,461 + -0.7 185,531 + -0.0 185,536 + -0.1 185,539 - -1.4 185,544 - -1.1 185,579 - +0.9 185,660 + Atu5190 0.18 +1.9 185,728 - Atu5190 0.28 -2.1 185,751 + Atu5190 0.31 -0.3 185,765 + Atu5190 0.33 -0.0 185,841 + Atu5190 0.43 -0.2 185,864 - Atu5190 0.47 +0.2 185,875 - Atu5190 0.48 -2.0 185,888 + Atu5190 0.50 -1.5 186,020 - Atu5190 0.68 -0.1 186,057 + Atu5190 0.73 -0.7 186,060 - Atu5190 0.74 -1.7 186,060 - Atu5190 0.74 +0.2
Or see this region's nucleotide sequence