Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3728 and Atu3729 are separated by 36 nucleotides Atu3729 and Atu3730 are separated by 304 nucleotides Atu3730 and Atu3731 are separated by 99 nucleotides Atu3731 and Atu3732 overlap by 1 nucleotides
Atu3728: Atu3728 - hypothetical protein, at 809,350 to 809,853
Atu3728
Atu3729: Atu3729 - hypothetical protein, at 809,890 to 810,543
Atu3729
Atu3730: Atu3730 - hypothetical protein, at 810,848 to 811,672
Atu3730
Atu3731: Atu3731 - 5-formyltetrahydrofolate cyclo-ligase, at 811,772 to 812,359
Atu3731
Atu3732: Atu3732 - hemolysin, at 812,359 to 813,636
Atu3732
Position (kb) 810
811
812 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 809.986 kb on + strand, within Atu3729 at 810.038 kb on + strand, within Atu3729 at 810.046 kb on - strand, within Atu3729 at 810.066 kb on + strand, within Atu3729 at 810.071 kb on + strand, within Atu3729 at 810.074 kb on - strand, within Atu3729 at 810.298 kb on + strand, within Atu3729 at 810.315 kb on + strand, within Atu3729 at 810.320 kb on + strand, within Atu3729 at 810.325 kb on + strand, within Atu3729 at 810.325 kb on + strand, within Atu3729 at 810.330 kb on - strand, within Atu3729 at 810.369 kb on - strand, within Atu3729 at 810.464 kb on + strand, within Atu3729 at 810.466 kb on + strand, within Atu3729 at 810.510 kb on + strand at 810.510 kb on + strand at 810.567 kb on - strand at 810.653 kb on - strand at 810.701 kb on + strand at 810.704 kb on - strand at 810.747 kb on - strand at 810.755 kb on + strand at 810.782 kb on - strand at 810.817 kb on - strand at 811.060 kb on - strand, within Atu3730 at 811.088 kb on - strand, within Atu3730 at 811.457 kb on - strand, within Atu3730 at 811.871 kb on + strand, within Atu3731 at 811.886 kb on + strand, within Atu3731 at 811.886 kb on + strand, within Atu3731 at 811.891 kb on + strand, within Atu3731 at 811.899 kb on - strand, within Atu3731 at 812.058 kb on + strand, within Atu3731 at 812.151 kb on + strand, within Atu3731 at 812.224 kb on + strand, within Atu3731 at 812.232 kb on - strand, within Atu3731 at 812.255 kb on - strand, within Atu3731 at 812.268 kb on + strand, within Atu3731 at 812.360 kb on - strand at 812.364 kb on - strand at 812.364 kb on - strand at 812.454 kb on + strand at 812.454 kb on + strand at 812.506 kb on - strand, within Atu3732
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 809,986 + Atu3729 0.15 +0.0 810,038 + Atu3729 0.23 -0.4 810,046 - Atu3729 0.24 +1.7 810,066 + Atu3729 0.27 +0.5 810,071 + Atu3729 0.28 +1.2 810,074 - Atu3729 0.28 +1.1 810,298 + Atu3729 0.62 -1.9 810,315 + Atu3729 0.65 +0.3 810,320 + Atu3729 0.66 +2.2 810,325 + Atu3729 0.67 +1.0 810,325 + Atu3729 0.67 -0.2 810,330 - Atu3729 0.67 -0.2 810,369 - Atu3729 0.73 +0.0 810,464 + Atu3729 0.88 +0.2 810,466 + Atu3729 0.88 +0.9 810,510 + +0.8 810,510 + +1.7 810,567 - +1.0 810,653 - -2.6 810,701 + -1.1 810,704 - +0.9 810,747 - +0.6 810,755 + -2.2 810,782 - +0.8 810,817 - -0.3 811,060 - Atu3730 0.26 -0.5 811,088 - Atu3730 0.29 -0.3 811,457 - Atu3730 0.74 -0.3 811,871 + Atu3731 0.17 -0.6 811,886 + Atu3731 0.19 -0.5 811,886 + Atu3731 0.19 -0.2 811,891 + Atu3731 0.20 -0.5 811,899 - Atu3731 0.22 -0.8 812,058 + Atu3731 0.49 -1.6 812,151 + Atu3731 0.64 +1.3 812,224 + Atu3731 0.77 -1.0 812,232 - Atu3731 0.78 -0.9 812,255 - Atu3731 0.82 -2.2 812,268 + Atu3731 0.84 -1.3 812,360 - +0.1 812,364 - +2.5 812,364 - -1.2 812,454 + -3.2 812,454 + -1.3 812,506 - Atu3732 0.12 -3.9
Or see this region's nucleotide sequence