Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3490 and Atu3491 are separated by 3 nucleotides Atu3491 and Atu3492 overlap by 4 nucleotides
Atu3490: Atu3490 - ABC transporter permease, at 541,189 to 542,199
Atu3490
Atu3491: Atu3491 - hypothetical protein, at 542,203 to 542,526
Atu3491
Atu3492: Atu3492 - sugar kinase, at 542,523 to 543,905
Atu3492
Position (kb) 542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 541.264 kb on - strand at 541.377 kb on - strand, within Atu3490 at 541.377 kb on - strand, within Atu3490 at 541.377 kb on - strand, within Atu3490 at 541.422 kb on - strand, within Atu3490 at 541.422 kb on - strand, within Atu3490 at 541.462 kb on + strand, within Atu3490 at 541.492 kb on + strand, within Atu3490 at 541.500 kb on - strand, within Atu3490 at 541.500 kb on - strand, within Atu3490 at 541.505 kb on - strand, within Atu3490 at 541.511 kb on + strand, within Atu3490 at 541.516 kb on + strand, within Atu3490 at 541.519 kb on - strand, within Atu3490 at 541.519 kb on - strand, within Atu3490 at 541.603 kb on + strand, within Atu3490 at 541.619 kb on + strand, within Atu3490 at 541.647 kb on - strand, within Atu3490 at 541.715 kb on - strand, within Atu3490 at 541.715 kb on - strand, within Atu3490 at 541.806 kb on + strand, within Atu3490 at 541.813 kb on - strand, within Atu3490 at 541.814 kb on - strand, within Atu3490 at 541.814 kb on - strand, within Atu3490 at 541.902 kb on - strand, within Atu3490 at 542.150 kb on - strand at 542.184 kb on + strand at 542.193 kb on + strand at 542.193 kb on + strand at 542.201 kb on - strand at 542.201 kb on - strand at 542.278 kb on + strand, within Atu3491 at 542.296 kb on - strand, within Atu3491 at 542.341 kb on + strand, within Atu3491 at 542.384 kb on + strand, within Atu3491 at 542.502 kb on + strand at 542.533 kb on + strand at 542.541 kb on - strand at 542.541 kb on - strand at 542.541 kb on - strand at 542.541 kb on - strand at 542.541 kb on - strand at 542.541 kb on - strand at 542.587 kb on - strand at 542.660 kb on + strand at 542.926 kb on - strand, within Atu3492 at 542.985 kb on + strand, within Atu3492 at 543.061 kb on + strand, within Atu3492 at 543.071 kb on + strand, within Atu3492 at 543.221 kb on + strand, within Atu3492
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 541,264 - +0.7 541,377 - Atu3490 0.19 +0.2 541,377 - Atu3490 0.19 -0.7 541,377 - Atu3490 0.19 +1.2 541,422 - Atu3490 0.23 +2.7 541,422 - Atu3490 0.23 -0.9 541,462 + Atu3490 0.27 +1.3 541,492 + Atu3490 0.30 -0.2 541,500 - Atu3490 0.31 -2.0 541,500 - Atu3490 0.31 -2.3 541,505 - Atu3490 0.31 +5.0 541,511 + Atu3490 0.32 +1.0 541,516 + Atu3490 0.32 +0.1 541,519 - Atu3490 0.33 -0.4 541,519 - Atu3490 0.33 -1.8 541,603 + Atu3490 0.41 -0.2 541,619 + Atu3490 0.43 +0.5 541,647 - Atu3490 0.45 +2.3 541,715 - Atu3490 0.52 +0.0 541,715 - Atu3490 0.52 -0.8 541,806 + Atu3490 0.61 +0.1 541,813 - Atu3490 0.62 +0.5 541,814 - Atu3490 0.62 +0.7 541,814 - Atu3490 0.62 +0.8 541,902 - Atu3490 0.71 +0.1 542,150 - +0.0 542,184 + -1.2 542,193 + +0.7 542,193 + +0.2 542,201 - -0.4 542,201 - -2.0 542,278 + Atu3491 0.23 -1.9 542,296 - Atu3491 0.29 +5.8 542,341 + Atu3491 0.43 +0.2 542,384 + Atu3491 0.56 -0.9 542,502 + -0.4 542,533 + -0.6 542,541 - +1.1 542,541 - -0.9 542,541 - -1.2 542,541 - +0.1 542,541 - -0.8 542,541 - -0.0 542,587 - +1.4 542,660 + -0.8 542,926 - Atu3492 0.29 +0.6 542,985 + Atu3492 0.33 -2.9 543,061 + Atu3492 0.39 +0.1 543,071 + Atu3492 0.40 -2.1 543,221 + Atu3492 0.50 +0.4
Or see this region's nucleotide sequence