Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3434 and Atu3435 overlap by 4 nucleotides Atu3435 and Atu3436 overlap by 4 nucleotides Atu3436 and Atu3437 overlap by 23 nucleotides Atu3437 and Atu3438 are separated by 18 nucleotides
Atu3434: Atu3434 - oligopeptide ABC transporter permease, at 480,755 to 481,744
Atu3434
Atu3435: Atu3435 - oligopeptide ABC transporter permease, at 481,741 to 482,736
Atu3435
Atu3436: Atu3436 - oligopeptide ABC transporter ATPase, at 482,733 to 483,731
Atu3436
Atu3437: Atu3437 - oligopeptide ABC transporter ATPase, at 483,709 to 484,644
Atu3437
Atu3438: Atu3438 - oxidoreductase, at 484,663 to 485,718
Atu3438
Position (kb) 482
483
484 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 481.763 kb on - strand at 481.773 kb on - strand at 481.800 kb on - strand at 481.969 kb on - strand, within Atu3435 at 481.990 kb on + strand, within Atu3435 at 482.095 kb on + strand, within Atu3435 at 482.103 kb on - strand, within Atu3435 at 482.103 kb on - strand, within Atu3435 at 482.109 kb on + strand, within Atu3435 at 482.302 kb on + strand, within Atu3435 at 482.329 kb on - strand, within Atu3435 at 482.607 kb on + strand, within Atu3435 at 482.617 kb on + strand, within Atu3435 at 482.625 kb on - strand, within Atu3435 at 482.630 kb on - strand, within Atu3435 at 482.703 kb on + strand at 482.797 kb on - strand at 482.836 kb on + strand, within Atu3436 at 482.880 kb on - strand, within Atu3436 at 482.917 kb on + strand, within Atu3436 at 482.925 kb on - strand, within Atu3436 at 483.061 kb on - strand, within Atu3436 at 483.209 kb on - strand, within Atu3436 at 483.291 kb on - strand, within Atu3436 at 483.397 kb on - strand, within Atu3436 at 483.453 kb on - strand, within Atu3436 at 483.454 kb on - strand, within Atu3436 at 483.512 kb on + strand, within Atu3436 at 483.520 kb on - strand, within Atu3436 at 483.562 kb on + strand, within Atu3436 at 483.598 kb on + strand, within Atu3436 at 483.606 kb on - strand, within Atu3436 at 483.643 kb on + strand at 483.719 kb on + strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.802 kb on - strand at 483.910 kb on - strand, within Atu3437 at 483.919 kb on - strand, within Atu3437 at 483.942 kb on + strand, within Atu3437 at 484.009 kb on - strand, within Atu3437 at 484.060 kb on - strand, within Atu3437 at 484.104 kb on + strand, within Atu3437 at 484.130 kb on + strand, within Atu3437 at 484.182 kb on - strand, within Atu3437 at 484.319 kb on + strand, within Atu3437 at 484.319 kb on + strand, within Atu3437 at 484.325 kb on + strand, within Atu3437 at 484.400 kb on + strand, within Atu3437 at 484.407 kb on + strand, within Atu3437 at 484.407 kb on + strand, within Atu3437 at 484.407 kb on + strand, within Atu3437 at 484.415 kb on - strand, within Atu3437 at 484.428 kb on + strand, within Atu3437 at 484.428 kb on + strand, within Atu3437 at 484.428 kb on + strand, within Atu3437 at 484.436 kb on - strand, within Atu3437 at 484.436 kb on - strand, within Atu3437 at 484.436 kb on - strand, within Atu3437 at 484.437 kb on - strand, within Atu3437 at 484.437 kb on - strand, within Atu3437 at 484.600 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 481,763 - +0.6 481,773 - -0.1 481,800 - +0.5 481,969 - Atu3435 0.23 +0.4 481,990 + Atu3435 0.25 +0.6 482,095 + Atu3435 0.36 -0.4 482,103 - Atu3435 0.36 +1.1 482,103 - Atu3435 0.36 +0.2 482,109 + Atu3435 0.37 -0.5 482,302 + Atu3435 0.56 -0.4 482,329 - Atu3435 0.59 +1.9 482,607 + Atu3435 0.87 -0.6 482,617 + Atu3435 0.88 -0.6 482,625 - Atu3435 0.89 -2.3 482,630 - Atu3435 0.89 -0.5 482,703 + +0.0 482,797 - -0.5 482,836 + Atu3436 0.10 +0.8 482,880 - Atu3436 0.15 +0.7 482,917 + Atu3436 0.18 -1.5 482,925 - Atu3436 0.19 +3.3 483,061 - Atu3436 0.33 +0.4 483,209 - Atu3436 0.48 -0.0 483,291 - Atu3436 0.56 +2.8 483,397 - Atu3436 0.66 +0.3 483,453 - Atu3436 0.72 +0.8 483,454 - Atu3436 0.72 -1.3 483,512 + Atu3436 0.78 +0.3 483,520 - Atu3436 0.79 +0.3 483,562 + Atu3436 0.83 +0.9 483,598 + Atu3436 0.87 +0.5 483,606 - Atu3436 0.87 +1.3 483,643 + +0.2 483,719 + +0.4 483,802 - -0.5 483,802 - -2.5 483,802 - -0.8 483,802 - -0.5 483,802 - +0.1 483,910 - Atu3437 0.21 +0.6 483,919 - Atu3437 0.22 +1.4 483,942 + Atu3437 0.25 -1.3 484,009 - Atu3437 0.32 +0.4 484,060 - Atu3437 0.38 +2.6 484,104 + Atu3437 0.42 +1.5 484,130 + Atu3437 0.45 -1.7 484,182 - Atu3437 0.51 +0.8 484,319 + Atu3437 0.65 +1.5 484,319 + Atu3437 0.65 -0.9 484,325 + Atu3437 0.66 +1.1 484,400 + Atu3437 0.74 -0.1 484,407 + Atu3437 0.75 +1.2 484,407 + Atu3437 0.75 -2.0 484,407 + Atu3437 0.75 +0.9 484,415 - Atu3437 0.75 -1.8 484,428 + Atu3437 0.77 -0.6 484,428 + Atu3437 0.77 -0.5 484,428 + Atu3437 0.77 -0.0 484,436 - Atu3437 0.78 -2.0 484,436 - Atu3437 0.78 +0.2 484,436 - Atu3437 0.78 +1.0 484,437 - Atu3437 0.78 -0.2 484,437 - Atu3437 0.78 -1.3 484,600 + -0.5
Or see this region's nucleotide sequence