Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3189 and Atu3190 are separated by 321 nucleotides Atu3190 and Atu3191 are separated by 209 nucleotides
Atu3189: Atu3189 - hypothetical protein, at 198,838 to 199,581
Atu3189
Atu3190: Atu3190 - hypothetical protein, at 199,903 to 200,346
Atu3190
Atu3191: Atu3191 - outer membrane protein, at 200,556 to 201,242
Atu3191
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 199.093 kb on + strand, within Atu3189 at 199.093 kb on + strand, within Atu3189 at 199.093 kb on + strand, within Atu3189 at 199.160 kb on + strand, within Atu3189 at 199.236 kb on + strand, within Atu3189 at 199.267 kb on - strand, within Atu3189 at 199.268 kb on - strand, within Atu3189 at 199.369 kb on + strand, within Atu3189 at 199.376 kb on - strand, within Atu3189 at 199.377 kb on - strand, within Atu3189 at 199.387 kb on - strand, within Atu3189 at 199.412 kb on + strand, within Atu3189 at 199.451 kb on + strand, within Atu3189 at 199.459 kb on - strand, within Atu3189 at 199.569 kb on + strand at 199.815 kb on + strand at 199.867 kb on + strand at 199.997 kb on - strand, within Atu3190 at 200.021 kb on + strand, within Atu3190 at 200.022 kb on - strand, within Atu3190 at 200.095 kb on - strand, within Atu3190 at 200.136 kb on + strand, within Atu3190 at 200.136 kb on + strand, within Atu3190 at 200.144 kb on - strand, within Atu3190 at 200.144 kb on - strand, within Atu3190 at 200.144 kb on - strand, within Atu3190 at 200.157 kb on + strand, within Atu3190 at 200.248 kb on - strand, within Atu3190 at 200.252 kb on + strand, within Atu3190 at 200.291 kb on + strand, within Atu3190 at 200.312 kb on + strand at 200.366 kb on - strand at 200.443 kb on + strand at 200.536 kb on + strand at 200.537 kb on + strand at 200.545 kb on - strand at 200.802 kb on + strand, within Atu3191 at 200.815 kb on + strand, within Atu3191 at 200.821 kb on - strand, within Atu3191 at 200.825 kb on - strand, within Atu3191 at 200.882 kb on + strand, within Atu3191 at 200.900 kb on - strand, within Atu3191 at 200.952 kb on + strand, within Atu3191 at 201.014 kb on + strand, within Atu3191 at 201.027 kb on - strand, within Atu3191 at 201.027 kb on - strand, within Atu3191 at 201.029 kb on + strand, within Atu3191 at 201.032 kb on - strand, within Atu3191 at 201.037 kb on - strand, within Atu3191 at 201.077 kb on + strand, within Atu3191 at 201.215 kb on - strand at 201.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 199,093 + Atu3189 0.34 -1.2 199,093 + Atu3189 0.34 -0.5 199,093 + Atu3189 0.34 -1.8 199,160 + Atu3189 0.43 -0.6 199,236 + Atu3189 0.53 +0.0 199,267 - Atu3189 0.58 +0.1 199,268 - Atu3189 0.58 -1.3 199,369 + Atu3189 0.71 +0.5 199,376 - Atu3189 0.72 -0.7 199,377 - Atu3189 0.72 -1.2 199,387 - Atu3189 0.74 +1.9 199,412 + Atu3189 0.77 -0.7 199,451 + Atu3189 0.82 -0.1 199,459 - Atu3189 0.83 -1.3 199,569 + +0.2 199,815 + +1.8 199,867 + -0.2 199,997 - Atu3190 0.21 -1.8 200,021 + Atu3190 0.27 -0.2 200,022 - Atu3190 0.27 +0.4 200,095 - Atu3190 0.43 +1.8 200,136 + Atu3190 0.52 +0.7 200,136 + Atu3190 0.52 -1.6 200,144 - Atu3190 0.54 -0.9 200,144 - Atu3190 0.54 -2.5 200,144 - Atu3190 0.54 -0.0 200,157 + Atu3190 0.57 -0.3 200,248 - Atu3190 0.78 -0.0 200,252 + Atu3190 0.79 -0.5 200,291 + Atu3190 0.87 -0.9 200,312 + -1.1 200,366 - +0.4 200,443 + +0.4 200,536 + +0.5 200,537 + -1.9 200,545 - +0.4 200,802 + Atu3191 0.36 -2.4 200,815 + Atu3191 0.38 +2.1 200,821 - Atu3191 0.39 +0.8 200,825 - Atu3191 0.39 -2.0 200,882 + Atu3191 0.47 +2.0 200,900 - Atu3191 0.50 -0.9 200,952 + Atu3191 0.58 +0.9 201,014 + Atu3191 0.67 +0.2 201,027 - Atu3191 0.69 -2.0 201,027 - Atu3191 0.69 -0.6 201,029 + Atu3191 0.69 +0.1 201,032 - Atu3191 0.69 +0.6 201,037 - Atu3191 0.70 +0.4 201,077 + Atu3191 0.76 +0.4 201,215 - -0.9 201,346 - -0.9
Or see this region's nucleotide sequence