Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0738 and Atu0739 are separated by 69 nucleotides Atu0739 and Atu0740 are separated by 119 nucleotides Atu0740 and Atu0741 are separated by 38 nucleotides
Atu0738: Atu0738 - chemotaxis methyl-accepting protein, at 736,601 to 738,622
Atu0738
Atu0739: Atu0739 - hypothetical protein, at 738,692 to 739,654
Atu0739
Atu0740: Atu0740 - transcriptional regulator, AsnC family, at 739,774 to 740,226
Atu0740
Atu0741: Atu0741 - hypothetical protein, at 740,265 to 740,648
Atu0741
Position (kb) 738
739
740 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 737.758 kb on - strand, within Atu0738 at 737.774 kb on + strand, within Atu0738 at 737.793 kb on + strand, within Atu0738 at 737.976 kb on + strand, within Atu0738 at 738.052 kb on + strand, within Atu0738 at 738.128 kb on - strand, within Atu0738 at 738.128 kb on - strand, within Atu0738 at 738.142 kb on + strand, within Atu0738 at 738.201 kb on - strand, within Atu0738 at 738.215 kb on - strand, within Atu0738 at 738.254 kb on + strand, within Atu0738 at 738.268 kb on + strand, within Atu0738 at 738.289 kb on - strand, within Atu0738 at 738.347 kb on + strand, within Atu0738 at 738.355 kb on - strand, within Atu0738 at 738.355 kb on - strand, within Atu0738 at 738.436 kb on - strand at 738.485 kb on + strand at 738.545 kb on + strand at 738.599 kb on + strand at 738.599 kb on + strand at 738.607 kb on - strand at 738.693 kb on + strand at 738.935 kb on + strand, within Atu0739 at 739.104 kb on - strand, within Atu0739 at 739.132 kb on + strand, within Atu0739 at 739.248 kb on + strand, within Atu0739 at 739.289 kb on - strand, within Atu0739 at 739.290 kb on + strand, within Atu0739 at 739.460 kb on - strand, within Atu0739 at 739.688 kb on - strand at 739.839 kb on - strand, within Atu0740 at 739.855 kb on + strand, within Atu0740 at 739.901 kb on + strand, within Atu0740 at 739.932 kb on + strand, within Atu0740 at 739.955 kb on - strand, within Atu0740 at 740.025 kb on - strand, within Atu0740 at 740.057 kb on + strand, within Atu0740 at 740.065 kb on - strand, within Atu0740 at 740.154 kb on + strand, within Atu0740 at 740.177 kb on - strand, within Atu0740
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 737,758 - Atu0738 0.57 +0.8 737,774 + Atu0738 0.58 -0.1 737,793 + Atu0738 0.59 +0.6 737,976 + Atu0738 0.68 -0.5 738,052 + Atu0738 0.72 -1.5 738,128 - Atu0738 0.76 +0.4 738,128 - Atu0738 0.76 -0.0 738,142 + Atu0738 0.76 +0.6 738,201 - Atu0738 0.79 -1.5 738,215 - Atu0738 0.80 -0.5 738,254 + Atu0738 0.82 -0.2 738,268 + Atu0738 0.82 +0.2 738,289 - Atu0738 0.83 -0.1 738,347 + Atu0738 0.86 +1.6 738,355 - Atu0738 0.87 +1.8 738,355 - Atu0738 0.87 +0.5 738,436 - +0.4 738,485 + +0.7 738,545 + +0.6 738,599 + +0.6 738,599 + +0.5 738,607 - -0.6 738,693 + +1.4 738,935 + Atu0739 0.25 +0.9 739,104 - Atu0739 0.43 -0.8 739,132 + Atu0739 0.46 +0.4 739,248 + Atu0739 0.58 +1.6 739,289 - Atu0739 0.62 +1.0 739,290 + Atu0739 0.62 +0.6 739,460 - Atu0739 0.80 -0.2 739,688 - -0.6 739,839 - Atu0740 0.14 -0.3 739,855 + Atu0740 0.18 -0.2 739,901 + Atu0740 0.28 +1.2 739,932 + Atu0740 0.35 +4.2 739,955 - Atu0740 0.40 +0.0 740,025 - Atu0740 0.55 +0.9 740,057 + Atu0740 0.62 -0.0 740,065 - Atu0740 0.64 +1.8 740,154 + Atu0740 0.84 +1.4 740,177 - Atu0740 0.89 -2.2
Or see this region's nucleotide sequence