Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0735 and Atu0736 overlap by 4 nucleotides Atu0736 and Atu0738 are separated by 278 nucleotides
Atu0735: Atu0735 - RNA methyltransferase, at 734,323 to 735,573
Atu0735
Atu0736: Atu0736 - hemolysin, at 735,570 to 736,322
Atu0736
Atu0738: Atu0738 - chemotaxis methyl-accepting protein, at 736,601 to 738,622
Atu0738
Position (kb) 735
736
737 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 734.597 kb on - strand, within Atu0735 at 734.613 kb on + strand, within Atu0735 at 734.613 kb on + strand, within Atu0735 at 734.621 kb on - strand, within Atu0735 at 734.653 kb on + strand, within Atu0735 at 734.661 kb on - strand, within Atu0735 at 734.729 kb on + strand, within Atu0735 at 734.737 kb on - strand, within Atu0735 at 734.774 kb on + strand, within Atu0735 at 735.164 kb on - strand, within Atu0735 at 735.232 kb on + strand, within Atu0735 at 735.307 kb on + strand, within Atu0735 at 735.400 kb on - strand, within Atu0735 at 735.439 kb on - strand, within Atu0735 at 735.443 kb on + strand, within Atu0735 at 735.443 kb on + strand, within Atu0735 at 735.443 kb on + strand, within Atu0735 at 735.444 kb on - strand, within Atu0735 at 735.451 kb on - strand at 735.488 kb on + strand at 735.514 kb on + strand at 735.516 kb on + strand at 735.576 kb on - strand at 735.640 kb on - strand at 735.717 kb on + strand, within Atu0736 at 735.841 kb on + strand, within Atu0736 at 735.919 kb on - strand, within Atu0736 at 735.920 kb on + strand, within Atu0736 at 735.963 kb on + strand, within Atu0736 at 735.988 kb on - strand, within Atu0736 at 736.046 kb on - strand, within Atu0736 at 736.079 kb on - strand, within Atu0736 at 736.105 kb on + strand, within Atu0736 at 736.110 kb on - strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.137 kb on - strand, within Atu0736 at 736.137 kb on - strand, within Atu0736 at 736.137 kb on - strand, within Atu0736 at 736.461 kb on - strand at 736.592 kb on - strand at 736.633 kb on + strand at 736.699 kb on + strand at 736.708 kb on - strand at 736.758 kb on - strand at 736.775 kb on - strand at 736.782 kb on + strand at 737.094 kb on + strand, within Atu0738 at 737.100 kb on - strand, within Atu0738 at 737.179 kb on - strand, within Atu0738 at 737.210 kb on + strand, within Atu0738 at 737.218 kb on - strand, within Atu0738 at 737.218 kb on - strand, within Atu0738 at 737.223 kb on - strand, within Atu0738
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 734,597 - Atu0735 0.22 -0.8 734,613 + Atu0735 0.23 +1.0 734,613 + Atu0735 0.23 -0.1 734,621 - Atu0735 0.24 -0.8 734,653 + Atu0735 0.26 +0.5 734,661 - Atu0735 0.27 +0.6 734,729 + Atu0735 0.32 +0.6 734,737 - Atu0735 0.33 -1.0 734,774 + Atu0735 0.36 +1.2 735,164 - Atu0735 0.67 -0.7 735,232 + Atu0735 0.73 +0.3 735,307 + Atu0735 0.79 +1.0 735,400 - Atu0735 0.86 +1.8 735,439 - Atu0735 0.89 -0.3 735,443 + Atu0735 0.90 +0.4 735,443 + Atu0735 0.90 -0.3 735,443 + Atu0735 0.90 -0.0 735,444 - Atu0735 0.90 +1.8 735,451 - +0.0 735,488 + +0.5 735,514 + -0.4 735,516 + +0.2 735,576 - +1.2 735,640 - +0.2 735,717 + Atu0736 0.20 -0.8 735,841 + Atu0736 0.36 +1.9 735,919 - Atu0736 0.46 -0.4 735,920 + Atu0736 0.46 +0.4 735,963 + Atu0736 0.52 -0.8 735,988 - Atu0736 0.56 -0.8 736,046 - Atu0736 0.63 -0.5 736,079 - Atu0736 0.68 -1.6 736,105 + Atu0736 0.71 -0.2 736,110 - Atu0736 0.72 +0.0 736,129 + Atu0736 0.74 -0.1 736,129 + Atu0736 0.74 -0.4 736,129 + Atu0736 0.74 -0.4 736,129 + Atu0736 0.74 -0.4 736,129 + Atu0736 0.74 -2.5 736,137 - Atu0736 0.75 +3.6 736,137 - Atu0736 0.75 -0.5 736,137 - Atu0736 0.75 +0.8 736,461 - +1.1 736,592 - +0.0 736,633 + -0.1 736,699 + -0.6 736,708 - +0.6 736,758 - +2.9 736,775 - +2.3 736,782 + -0.5 737,094 + Atu0738 0.24 -1.3 737,100 - Atu0738 0.25 -0.8 737,179 - Atu0738 0.29 +2.6 737,210 + Atu0738 0.30 -1.2 737,218 - Atu0738 0.31 -1.1 737,218 - Atu0738 0.31 +1.2 737,223 - Atu0738 0.31 -0.5
Or see this region's nucleotide sequence