Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0305 and Atu0306 are separated by 170 nucleotides Atu0306 and Atu0307 are separated by 11 nucleotides Atu0307 and Atu0308 are separated by 10 nucleotides
Atu0305: Atu0305 - ABC transporter, substrate binding protein (sn-glycerol 3-phosphate), at 297,125 to 298,423
Atu0305
Atu0306: Atu0306 - ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate), at 298,594 to 299,475
Atu0306
Atu0307: Atu0307 - ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate), at 299,487 to 300,329
Atu0307
Atu0308: Atu0308 - ABC transporter, nucleotide binding/ATPase protein (sn-Glycerol-3-phosphate), at 300,340 to 301,440
Atu0308
Position (kb) 298
299
300 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 297.610 kb on + strand, within Atu0305 at 297.610 kb on - strand, within Atu0305 at 297.612 kb on + strand, within Atu0305 at 297.669 kb on - strand, within Atu0305 at 297.669 kb on - strand, within Atu0305 at 297.678 kb on - strand, within Atu0305 at 297.757 kb on - strand, within Atu0305 at 297.757 kb on - strand, within Atu0305 at 297.783 kb on - strand, within Atu0305 at 297.817 kb on + strand, within Atu0305 at 297.825 kb on - strand, within Atu0305 at 297.908 kb on - strand, within Atu0305 at 297.916 kb on - strand, within Atu0305 at 297.928 kb on + strand, within Atu0305 at 297.949 kb on - strand, within Atu0305 at 297.956 kb on + strand, within Atu0305 at 297.964 kb on - strand, within Atu0305 at 297.997 kb on + strand, within Atu0305 at 297.997 kb on + strand, within Atu0305 at 298.100 kb on + strand, within Atu0305 at 298.138 kb on + strand, within Atu0305 at 298.139 kb on - strand, within Atu0305 at 298.159 kb on + strand, within Atu0305 at 298.167 kb on - strand, within Atu0305 at 298.180 kb on + strand, within Atu0305 at 298.185 kb on + strand, within Atu0305 at 298.187 kb on + strand, within Atu0305 at 298.261 kb on + strand, within Atu0305 at 298.261 kb on + strand, within Atu0305 at 298.261 kb on + strand, within Atu0305 at 298.261 kb on + strand, within Atu0305 at 298.261 kb on + strand, within Atu0305 at 298.261 kb on + strand, within Atu0305 at 298.261 kb on + strand, within Atu0305 at 298.261 kb on + strand, within Atu0305 at 298.269 kb on - strand, within Atu0305 at 298.269 kb on - strand, within Atu0305 at 298.269 kb on - strand, within Atu0305 at 298.269 kb on - strand, within Atu0305 at 298.269 kb on - strand, within Atu0305 at 298.269 kb on - strand, within Atu0305 at 298.297 kb on - strand at 298.302 kb on - strand at 298.324 kb on - strand at 298.479 kb on + strand at 298.489 kb on + strand at 298.489 kb on + strand at 298.489 kb on + strand at 298.504 kb on + strand at 298.517 kb on - strand at 298.517 kb on - strand at 298.560 kb on + strand at 298.568 kb on - strand at 298.608 kb on + strand at 298.625 kb on + strand at 298.816 kb on + strand, within Atu0306 at 298.858 kb on - strand, within Atu0306 at 298.911 kb on - strand, within Atu0306 at 298.935 kb on - strand, within Atu0306 at 299.022 kb on - strand, within Atu0306 at 299.028 kb on + strand, within Atu0306 at 299.073 kb on - strand, within Atu0306 at 299.083 kb on + strand, within Atu0306 at 299.193 kb on + strand, within Atu0306 at 299.201 kb on - strand, within Atu0306 at 299.230 kb on + strand, within Atu0306 at 299.258 kb on + strand, within Atu0306 at 299.276 kb on + strand, within Atu0306 at 299.276 kb on - strand, within Atu0306 at 299.276 kb on - strand, within Atu0306 at 299.312 kb on - strand, within Atu0306 at 299.334 kb on + strand, within Atu0306 at 299.334 kb on + strand, within Atu0306 at 299.344 kb on + strand, within Atu0306 at 299.439 kb on - strand at 299.492 kb on - strand at 299.502 kb on + strand at 299.545 kb on - strand at 299.574 kb on + strand, within Atu0307 at 299.622 kb on - strand, within Atu0307 at 299.694 kb on + strand, within Atu0307 at 299.702 kb on - strand, within Atu0307 at 299.817 kb on + strand, within Atu0307 at 299.848 kb on - strand, within Atu0307 at 299.880 kb on - strand, within Atu0307 at 300.004 kb on - strand, within Atu0307 at 300.062 kb on + strand, within Atu0307 at 300.070 kb on - strand, within Atu0307 at 300.109 kb on + strand, within Atu0307 at 300.109 kb on + strand, within Atu0307 at 300.117 kb on - strand, within Atu0307 at 300.117 kb on - strand, within Atu0307 at 300.122 kb on + strand, within Atu0307 at 300.122 kb on + strand, within Atu0307 at 300.122 kb on + strand, within Atu0307 at 300.130 kb on - strand, within Atu0307 at 300.147 kb on + strand, within Atu0307 at 300.175 kb on + strand, within Atu0307 at 300.195 kb on + strand, within Atu0307 at 300.202 kb on - strand, within Atu0307 at 300.262 kb on + strand at 300.301 kb on + strand at 300.363 kb on + strand at 300.372 kb on + strand at 300.400 kb on - strand at 300.468 kb on + strand, within Atu0308
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 297,610 + Atu0305 0.37 -0.7 297,610 - Atu0305 0.37 -1.2 297,612 + Atu0305 0.37 -0.1 297,669 - Atu0305 0.42 +4.1 297,669 - Atu0305 0.42 -0.2 297,678 - Atu0305 0.43 -2.0 297,757 - Atu0305 0.49 +1.8 297,757 - Atu0305 0.49 +0.7 297,783 - Atu0305 0.51 -2.7 297,817 + Atu0305 0.53 -0.8 297,825 - Atu0305 0.54 +1.7 297,908 - Atu0305 0.60 +0.8 297,916 - Atu0305 0.61 -1.6 297,928 + Atu0305 0.62 -0.7 297,949 - Atu0305 0.63 +0.6 297,956 + Atu0305 0.64 -2.2 297,964 - Atu0305 0.65 -0.8 297,997 + Atu0305 0.67 -0.1 297,997 + Atu0305 0.67 -0.2 298,100 + Atu0305 0.75 +0.9 298,138 + Atu0305 0.78 -1.4 298,139 - Atu0305 0.78 +0.1 298,159 + Atu0305 0.80 +1.3 298,167 - Atu0305 0.80 +0.9 298,180 + Atu0305 0.81 +1.2 298,185 + Atu0305 0.82 -2.1 298,187 + Atu0305 0.82 -1.5 298,261 + Atu0305 0.87 +0.6 298,261 + Atu0305 0.87 +0.3 298,261 + Atu0305 0.87 +1.2 298,261 + Atu0305 0.87 -0.7 298,261 + Atu0305 0.87 -0.2 298,261 + Atu0305 0.87 +0.8 298,261 + Atu0305 0.87 -2.7 298,261 + Atu0305 0.87 -0.0 298,269 - Atu0305 0.88 +0.5 298,269 - Atu0305 0.88 +1.7 298,269 - Atu0305 0.88 +0.4 298,269 - Atu0305 0.88 -1.0 298,269 - Atu0305 0.88 +0.9 298,269 - Atu0305 0.88 +0.4 298,297 - -0.9 298,302 - -0.8 298,324 - -2.3 298,479 + -0.1 298,489 + -2.0 298,489 + +1.4 298,489 + +0.6 298,504 + -0.8 298,517 - -1.7 298,517 - +0.1 298,560 + -0.5 298,568 - -0.4 298,608 + +0.4 298,625 + -0.4 298,816 + Atu0306 0.25 +0.4 298,858 - Atu0306 0.30 +0.2 298,911 - Atu0306 0.36 -0.1 298,935 - Atu0306 0.39 +3.4 299,022 - Atu0306 0.49 +0.1 299,028 + Atu0306 0.49 +2.0 299,073 - Atu0306 0.54 +0.0 299,083 + Atu0306 0.55 -1.1 299,193 + Atu0306 0.68 +1.6 299,201 - Atu0306 0.69 +1.3 299,230 + Atu0306 0.72 -0.2 299,258 + Atu0306 0.75 +0.4 299,276 + Atu0306 0.77 +0.1 299,276 - Atu0306 0.77 -1.9 299,276 - Atu0306 0.77 +0.5 299,312 - Atu0306 0.81 +0.4 299,334 + Atu0306 0.84 +0.5 299,334 + Atu0306 0.84 +0.2 299,344 + Atu0306 0.85 -0.7 299,439 - +0.8 299,492 - -0.2 299,502 + -0.2 299,545 - +1.6 299,574 + Atu0307 0.10 +1.1 299,622 - Atu0307 0.16 -0.6 299,694 + Atu0307 0.25 +1.0 299,702 - Atu0307 0.26 -1.8 299,817 + Atu0307 0.39 -0.7 299,848 - Atu0307 0.43 +0.4 299,880 - Atu0307 0.47 -0.2 300,004 - Atu0307 0.61 +2.3 300,062 + Atu0307 0.68 +0.4 300,070 - Atu0307 0.69 -0.2 300,109 + Atu0307 0.74 -0.2 300,109 + Atu0307 0.74 -0.2 300,117 - Atu0307 0.75 +0.5 300,117 - Atu0307 0.75 +0.1 300,122 + Atu0307 0.75 -1.1 300,122 + Atu0307 0.75 +0.1 300,122 + Atu0307 0.75 -0.2 300,130 - Atu0307 0.76 +0.2 300,147 + Atu0307 0.78 -1.0 300,175 + Atu0307 0.82 +0.0 300,195 + Atu0307 0.84 -1.3 300,202 - Atu0307 0.85 +0.7 300,262 + +0.9 300,301 + -1.3 300,363 + -1.4 300,372 + -0.5 300,400 - +0.4 300,468 + Atu0308 0.12 +2.4
Or see this region's nucleotide sequence