Experiment: Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0146 and Atu0147 are separated by 38 nucleotides Atu0147 and Atu0148 are separated by 83 nucleotides Atu0148 and Atu0149 are separated by 184 nucleotides Atu0149 and Atu0150 are separated by 6 nucleotides
Atu0146: Atu0146 - sulfite reductase (NADPH) flavoprotein alpha-component, at 154,282 to 156,051
Atu0146
Atu0147: Atu0147 - hypothetical protein, at 156,090 to 156,596
Atu0147
Atu0148: Atu0148 - Atu0148-1 mutant of a conserved hypothetical protein, at 156,680 to 157,276
Atu0148
Atu0149: Atu0149 - enoyl-(acyl-carrier-protein) reductase, at 157,461 to 158,267
Atu0149
Atu0150: Atu0150 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 158,274 to 159,497
Atu0150
Position (kb) 156
157
158 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 155.856 kb on - strand, within Atu0146 at 155.876 kb on + strand at 155.876 kb on + strand at 155.913 kb on + strand at 155.952 kb on - strand at 156.053 kb on - strand at 156.081 kb on + strand at 156.095 kb on + strand at 156.184 kb on + strand, within Atu0147 at 156.240 kb on + strand, within Atu0147 at 156.272 kb on + strand, within Atu0147 at 156.435 kb on - strand, within Atu0147 at 156.530 kb on + strand, within Atu0147 at 156.665 kb on + strand at 156.759 kb on - strand, within Atu0148 at 156.841 kb on - strand, within Atu0148 at 157.215 kb on + strand, within Atu0148 at 157.260 kb on + strand at 157.291 kb on + strand at 157.482 kb on - strand at 157.482 kb on - strand at 157.482 kb on - strand at 157.561 kb on + strand, within Atu0149 at 157.588 kb on - strand, within Atu0149 at 157.795 kb on + strand, within Atu0149 at 157.828 kb on + strand, within Atu0149 at 157.868 kb on + strand, within Atu0149 at 158.091 kb on + strand, within Atu0149 at 158.160 kb on - strand, within Atu0149 at 158.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 155,856 - Atu0146 0.89 -0.2 155,876 + +1.5 155,876 + +0.8 155,913 + -1.1 155,952 - -0.3 156,053 - +0.7 156,081 + +4.4 156,095 + +1.2 156,184 + Atu0147 0.19 -0.7 156,240 + Atu0147 0.30 -1.0 156,272 + Atu0147 0.36 +1.5 156,435 - Atu0147 0.68 +0.1 156,530 + Atu0147 0.87 -0.9 156,665 + +0.6 156,759 - Atu0148 0.13 +0.4 156,841 - Atu0148 0.27 -0.6 157,215 + Atu0148 0.90 +1.1 157,260 + +0.7 157,291 + +1.4 157,482 - +1.2 157,482 - +0.6 157,482 - +1.2 157,561 + Atu0149 0.12 +0.4 157,588 - Atu0149 0.16 -0.6 157,795 + Atu0149 0.41 +0.7 157,828 + Atu0149 0.45 -0.4 157,868 + Atu0149 0.50 -0.3 158,091 + Atu0149 0.78 +0.9 158,160 - Atu0149 0.87 -0.6 158,257 + +1.2
Or see this region's nucleotide sequence