Strain Fitness in Agrobacterium fabrum C58 around Atu5206

Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5205 and Atu5206 are separated by 274 nucleotidesAtu5206 and Atu5207 are separated by 184 nucleotides Atu5205: Atu5205 - hypothetical protein, at 203,504 to 204,022 Atu5205 Atu5206: Atu5206 - LysR family transcriptional regulator, at 204,297 to 205,196 Atu5206 Atu5207: Atu5207 - hypothetical protein, at 205,381 to 206,214 Atu5207 Position (kb) 204 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 203.310 kb on - strandat 203.423 kb on + strandat 203.452 kb on + strandat 203.467 kb on + strandat 203.576 kb on - strand, within Atu5205at 203.638 kb on + strand, within Atu5205at 203.643 kb on + strand, within Atu5205at 203.646 kb on - strand, within Atu5205at 203.659 kb on + strand, within Atu5205at 203.659 kb on + strand, within Atu5205at 203.660 kb on + strand, within Atu5205at 203.667 kb on - strand, within Atu5205at 203.667 kb on - strand, within Atu5205at 203.683 kb on + strand, within Atu5205at 203.698 kb on - strand, within Atu5205at 203.702 kb on - strand, within Atu5205at 203.712 kb on + strand, within Atu5205at 203.772 kb on + strand, within Atu5205at 203.825 kb on + strand, within Atu5205at 203.831 kb on - strand, within Atu5205at 203.894 kb on - strand, within Atu5205at 203.894 kb on - strand, within Atu5205at 203.929 kb on + strand, within Atu5205at 203.986 kb on + strandat 204.063 kb on - strandat 204.097 kb on - strandat 204.191 kb on + strandat 204.199 kb on - strandat 204.220 kb on + strandat 204.308 kb on - strandat 204.330 kb on + strandat 204.392 kb on - strand, within Atu5206at 204.425 kb on + strand, within Atu5206at 204.450 kb on + strand, within Atu5206at 204.450 kb on + strand, within Atu5206at 204.450 kb on + strand, within Atu5206at 204.458 kb on - strand, within Atu5206at 204.529 kb on + strand, within Atu5206at 204.557 kb on + strand, within Atu5206at 204.560 kb on - strand, within Atu5206at 204.596 kb on + strand, within Atu5206at 204.603 kb on + strand, within Atu5206at 204.604 kb on + strand, within Atu5206at 204.604 kb on - strand, within Atu5206at 204.641 kb on + strand, within Atu5206at 204.641 kb on + strand, within Atu5206at 204.641 kb on + strand, within Atu5206at 204.641 kb on + strand, within Atu5206at 204.649 kb on - strand, within Atu5206at 204.649 kb on - strand, within Atu5206at 204.649 kb on - strand, within Atu5206at 204.676 kb on + strand, within Atu5206at 204.680 kb on - strand, within Atu5206at 204.694 kb on - strand, within Atu5206at 204.701 kb on + strand, within Atu5206at 204.709 kb on - strand, within Atu5206at 204.847 kb on + strand, within Atu5206at 204.862 kb on + strand, within Atu5206at 204.862 kb on + strand, within Atu5206at 204.862 kb on + strand, within Atu5206at 204.862 kb on + strand, within Atu5206at 204.870 kb on - strand, within Atu5206at 204.870 kb on - strand, within Atu5206at 204.895 kb on + strand, within Atu5206at 204.903 kb on - strand, within Atu5206at 204.903 kb on - strand, within Atu5206at 204.913 kb on - strand, within Atu5206at 204.934 kb on + strand, within Atu5206at 204.935 kb on - strand, within Atu5206at 204.949 kb on + strand, within Atu5206at 204.951 kb on + strand, within Atu5206at 204.951 kb on + strand, within Atu5206at 204.965 kb on + strand, within Atu5206at 204.965 kb on + strand, within Atu5206at 204.968 kb on - strand, within Atu5206at 204.973 kb on - strand, within Atu5206at 204.973 kb on - strand, within Atu5206at 204.976 kb on + strand, within Atu5206at 204.991 kb on - strand, within Atu5206at 205.010 kb on + strand, within Atu5206at 205.038 kb on - strand, within Atu5206at 205.038 kb on - strand, within Atu5206at 205.040 kb on + strand, within Atu5206at 205.040 kb on + strand, within Atu5206at 205.040 kb on + strand, within Atu5206at 205.040 kb on + strand, within Atu5206at 205.040 kb on - strand, within Atu5206at 205.166 kb on - strandat 205.279 kb on + strandat 205.331 kb on + strandat 205.348 kb on + strandat 205.352 kb on + strandat 205.353 kb on + strandat 205.378 kb on + strandat 205.469 kb on + strand, within Atu5207at 205.477 kb on - strand, within Atu5207at 205.804 kb on + strand, within Atu5207at 205.838 kb on - strand, within Atu5207at 205.856 kb on + strand, within Atu5207at 205.856 kb on + strand, within Atu5207at 205.981 kb on + strand, within Atu5207at 205.981 kb on + strand, within Atu5207at 205.981 kb on + strand, within Atu5207at 205.989 kb on - strand, within Atu5207at 206.082 kb on + strand, within Atu5207at 206.090 kb on - strand, within Atu5207at 206.141 kb on + strandat 206.149 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
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203,310 - +0.6
203,423 + -2.2
203,452 + +0.2
203,467 + -2.5
203,576 - Atu5205 0.14 -0.5
203,638 + Atu5205 0.26 -0.3
203,643 + Atu5205 0.27 +0.6
203,646 - Atu5205 0.27 +0.3
203,659 + Atu5205 0.30 +1.0
203,659 + Atu5205 0.30 +1.6
203,660 + Atu5205 0.30 -0.2
203,667 - Atu5205 0.31 -1.8
203,667 - Atu5205 0.31 +0.6
203,683 + Atu5205 0.34 +1.5
203,698 - Atu5205 0.37 +1.5
203,702 - Atu5205 0.38 -0.2
203,712 + Atu5205 0.40 -1.0
203,772 + Atu5205 0.52 +0.5
203,825 + Atu5205 0.62 +0.2
203,831 - Atu5205 0.63 +0.1
203,894 - Atu5205 0.75 -0.4
203,894 - Atu5205 0.75 -0.2
203,929 + Atu5205 0.82 +0.2
203,986 + -0.9
204,063 - +0.3
204,097 - -0.5
204,191 + +1.9
204,199 - -0.4
204,220 + +1.7
204,308 - -1.3
204,330 + +0.9
204,392 - Atu5206 0.11 +1.0
204,425 + Atu5206 0.14 +0.2
204,450 + Atu5206 0.17 -0.8
204,450 + Atu5206 0.17 +1.9
204,450 + Atu5206 0.17 +0.8
204,458 - Atu5206 0.18 -0.2
204,529 + Atu5206 0.26 -0.3
204,557 + Atu5206 0.29 +0.9
204,560 - Atu5206 0.29 +0.7
204,596 + Atu5206 0.33 +0.2
204,603 + Atu5206 0.34 -0.0
204,604 + Atu5206 0.34 -0.0
204,604 - Atu5206 0.34 -2.4
204,641 + Atu5206 0.38 +0.6
204,641 + Atu5206 0.38 -0.7
204,641 + Atu5206 0.38 -0.2
204,641 + Atu5206 0.38 +0.1
204,649 - Atu5206 0.39 -1.4
204,649 - Atu5206 0.39 +0.7
204,649 - Atu5206 0.39 +2.1
204,676 + Atu5206 0.42 -0.1
204,680 - Atu5206 0.43 +0.2
204,694 - Atu5206 0.44 +0.4
204,701 + Atu5206 0.45 +1.0
204,709 - Atu5206 0.46 -0.1
204,847 + Atu5206 0.61 -0.4
204,862 + Atu5206 0.63 -2.0
204,862 + Atu5206 0.63 -0.1
204,862 + Atu5206 0.63 -1.6
204,862 + Atu5206 0.63 -0.1
204,870 - Atu5206 0.64 +1.0
204,870 - Atu5206 0.64 -1.7
204,895 + Atu5206 0.66 -1.1
204,903 - Atu5206 0.67 +0.2
204,903 - Atu5206 0.67 +1.1
204,913 - Atu5206 0.68 -0.2
204,934 + Atu5206 0.71 +0.6
204,935 - Atu5206 0.71 +0.9
204,949 + Atu5206 0.72 +0.0
204,951 + Atu5206 0.73 -0.8
204,951 + Atu5206 0.73 +0.7
204,965 + Atu5206 0.74 -0.5
204,965 + Atu5206 0.74 +0.0
204,968 - Atu5206 0.75 +2.8
204,973 - Atu5206 0.75 +1.1
204,973 - Atu5206 0.75 +0.3
204,976 + Atu5206 0.75 +3.4
204,991 - Atu5206 0.77 -0.5
205,010 + Atu5206 0.79 -1.6
205,038 - Atu5206 0.82 -0.1
205,038 - Atu5206 0.82 +0.5
205,040 + Atu5206 0.83 +0.1
205,040 + Atu5206 0.83 +0.2
205,040 + Atu5206 0.83 +0.1
205,040 + Atu5206 0.83 +3.8
205,040 - Atu5206 0.83 +0.5
205,166 - -0.6
205,279 + -0.0
205,331 + -1.7
205,348 + -1.4
205,352 + -0.0
205,353 + -0.6
205,378 + +0.1
205,469 + Atu5207 0.11 -0.2
205,477 - Atu5207 0.12 +0.4
205,804 + Atu5207 0.51 -0.1
205,838 - Atu5207 0.55 -1.8
205,856 + Atu5207 0.57 -3.4
205,856 + Atu5207 0.57 -0.9
205,981 + Atu5207 0.72 -0.2
205,981 + Atu5207 0.72 +1.1
205,981 + Atu5207 0.72 -1.5
205,989 - Atu5207 0.73 -1.6
206,082 + Atu5207 0.84 +0.6
206,090 - Atu5207 0.85 -1.2
206,141 + +0.9
206,149 - -0.7

Or see this region's nucleotide sequence