Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5171 and Atu5172 are separated by 8 nucleotides Atu5172 and Atu5173 are separated by 51 nucleotides Atu5173 and Atu8203 are separated by 509 nucleotides
Atu5171: Atu5171 - type IV secretion protein AvhB10, at 167,919 to 169,091
Atu5171
Atu5172: Atu5172 - type IV secretion protein AvhB11, at 169,100 to 170,110
Atu5172
Atu5173: Atu5173 - dehydrogenase, at 170,162 to 170,551
Atu5173
Atu8203: Atu8203 - hypothetical protein, at 171,061 to 171,345
Atu8203
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 168.276 kb on - strand, within Atu5171 at 168.308 kb on - strand, within Atu5171 at 168.318 kb on - strand, within Atu5171 at 168.318 kb on - strand, within Atu5171 at 168.613 kb on - strand, within Atu5171 at 168.696 kb on - strand, within Atu5171 at 168.741 kb on + strand, within Atu5171 at 168.882 kb on - strand, within Atu5171 at 168.892 kb on - strand, within Atu5171 at 168.949 kb on - strand, within Atu5171 at 168.949 kb on - strand, within Atu5171 at 168.965 kb on - strand, within Atu5171 at 169.003 kb on + strand at 169.077 kb on - strand at 169.138 kb on + strand at 169.165 kb on + strand at 169.319 kb on + strand, within Atu5172 at 169.421 kb on - strand, within Atu5172 at 169.448 kb on - strand, within Atu5172 at 169.454 kb on - strand, within Atu5172 at 169.512 kb on - strand, within Atu5172 at 169.512 kb on - strand, within Atu5172 at 169.519 kb on + strand, within Atu5172 at 169.519 kb on + strand, within Atu5172 at 169.523 kb on + strand, within Atu5172 at 169.527 kb on - strand, within Atu5172 at 169.698 kb on + strand, within Atu5172 at 169.821 kb on + strand, within Atu5172 at 169.903 kb on - strand, within Atu5172 at 169.932 kb on + strand, within Atu5172 at 170.076 kb on - strand at 170.082 kb on - strand at 170.141 kb on - strand at 170.191 kb on + strand at 170.243 kb on + strand, within Atu5173 at 170.265 kb on - strand, within Atu5173 at 170.301 kb on + strand, within Atu5173 at 170.365 kb on - strand, within Atu5173 at 170.563 kb on + strand at 170.599 kb on + strand at 170.599 kb on + strand at 170.715 kb on + strand at 170.857 kb on + strand at 170.871 kb on + strand at 170.878 kb on - strand at 170.879 kb on - strand at 170.879 kb on - strand at 170.967 kb on + strand at 171.053 kb on + strand at 171.107 kb on + strand, within Atu8203
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 168,276 - Atu5171 0.30 -2.7 168,308 - Atu5171 0.33 -0.8 168,318 - Atu5171 0.34 -0.2 168,318 - Atu5171 0.34 +0.5 168,613 - Atu5171 0.59 -0.6 168,696 - Atu5171 0.66 +0.1 168,741 + Atu5171 0.70 -0.4 168,882 - Atu5171 0.82 -0.6 168,892 - Atu5171 0.83 -0.0 168,949 - Atu5171 0.88 -3.1 168,949 - Atu5171 0.88 -0.5 168,965 - Atu5171 0.89 -0.9 169,003 + -0.1 169,077 - -0.6 169,138 + -0.2 169,165 + -0.8 169,319 + Atu5172 0.22 -0.1 169,421 - Atu5172 0.32 +1.4 169,448 - Atu5172 0.34 -0.4 169,454 - Atu5172 0.35 +1.2 169,512 - Atu5172 0.41 +0.1 169,512 - Atu5172 0.41 +1.3 169,519 + Atu5172 0.41 -0.5 169,519 + Atu5172 0.41 -0.6 169,523 + Atu5172 0.42 +0.5 169,527 - Atu5172 0.42 +0.1 169,698 + Atu5172 0.59 -1.2 169,821 + Atu5172 0.71 +0.4 169,903 - Atu5172 0.79 +0.1 169,932 + Atu5172 0.82 +1.0 170,076 - +0.3 170,082 - -1.1 170,141 - -1.8 170,191 + -1.0 170,243 + Atu5173 0.21 -2.8 170,265 - Atu5173 0.26 +0.3 170,301 + Atu5173 0.36 +0.3 170,365 - Atu5173 0.52 -1.7 170,563 + -0.7 170,599 + -3.3 170,599 + -0.0 170,715 + +0.9 170,857 + +2.1 170,871 + +0.5 170,878 - -0.2 170,879 - -0.2 170,879 - -1.0 170,967 + +0.4 171,053 + +2.0 171,107 + Atu8203 0.16 -0.4
Or see this region's nucleotide sequence