Experiment: Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5124 and Atu5125 are separated by 114 nucleotides Atu5125 and Atu5126 are separated by 205 nucleotides
Atu5124: Atu5124 - glutamate-1-semialdehyde aminotransferase, at 130,916 to 132,250
Atu5124
Atu5125: Atu5125 - GntR family transcriptional regulator, at 132,365 to 133,054
Atu5125
Atu5126: Atu5126 - ABC transporter nucleotide binding/ATPase(putrescine), at 133,260 to 134,372
Atu5126
Position (kb) 132
133
134 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 131.383 kb on + strand, within Atu5124 at 131.389 kb on - strand, within Atu5124 at 131.429 kb on - strand, within Atu5124 at 131.449 kb on - strand, within Atu5124 at 131.506 kb on - strand, within Atu5124 at 131.506 kb on - strand, within Atu5124 at 131.506 kb on - strand, within Atu5124 at 131.549 kb on + strand, within Atu5124 at 131.567 kb on + strand, within Atu5124 at 131.569 kb on + strand, within Atu5124 at 131.577 kb on - strand, within Atu5124 at 131.579 kb on - strand, within Atu5124 at 131.590 kb on + strand, within Atu5124 at 131.590 kb on - strand, within Atu5124 at 131.777 kb on + strand, within Atu5124 at 131.777 kb on + strand, within Atu5124 at 131.777 kb on + strand, within Atu5124 at 131.777 kb on + strand, within Atu5124 at 131.785 kb on - strand, within Atu5124 at 131.785 kb on - strand, within Atu5124 at 131.785 kb on - strand, within Atu5124 at 131.785 kb on - strand, within Atu5124 at 131.785 kb on - strand, within Atu5124 at 131.799 kb on + strand, within Atu5124 at 131.799 kb on + strand, within Atu5124 at 131.799 kb on + strand, within Atu5124 at 131.799 kb on + strand, within Atu5124 at 131.807 kb on - strand, within Atu5124 at 131.807 kb on - strand, within Atu5124 at 131.807 kb on - strand, within Atu5124 at 131.807 kb on - strand, within Atu5124 at 131.881 kb on + strand, within Atu5124 at 131.894 kb on + strand, within Atu5124 at 131.974 kb on - strand, within Atu5124 at 131.984 kb on - strand, within Atu5124 at 131.984 kb on - strand, within Atu5124 at 132.011 kb on - strand, within Atu5124 at 132.121 kb on + strand at 132.144 kb on - strand at 132.148 kb on + strand at 132.525 kb on + strand, within Atu5125 at 132.533 kb on - strand, within Atu5125 at 132.533 kb on - strand, within Atu5125 at 132.541 kb on + strand, within Atu5125 at 132.549 kb on - strand, within Atu5125 at 132.565 kb on + strand, within Atu5125 at 132.786 kb on - strand, within Atu5125 at 132.834 kb on - strand, within Atu5125 at 132.877 kb on - strand, within Atu5125 at 132.892 kb on - strand, within Atu5125 at 132.899 kb on + strand, within Atu5125 at 132.920 kb on + strand, within Atu5125 at 132.966 kb on + strand, within Atu5125 at 133.009 kb on + strand at 133.036 kb on - strand at 133.218 kb on - strand at 133.281 kb on + strand at 133.281 kb on - strand at 133.360 kb on + strand at 133.365 kb on + strand at 133.373 kb on - strand, within Atu5126 at 133.378 kb on - strand, within Atu5126 at 133.378 kb on - strand, within Atu5126 at 133.386 kb on + strand, within Atu5126 at 133.394 kb on - strand, within Atu5126 at 133.449 kb on - strand, within Atu5126 at 133.539 kb on - strand, within Atu5126 at 133.586 kb on - strand, within Atu5126 at 133.657 kb on + strand, within Atu5126 at 133.675 kb on + strand, within Atu5126 at 133.711 kb on + strand, within Atu5126 at 133.711 kb on + strand, within Atu5126 at 133.782 kb on - strand, within Atu5126 at 133.784 kb on - strand, within Atu5126 at 133.801 kb on + strand, within Atu5126 at 133.801 kb on + strand, within Atu5126 at 133.809 kb on - strand, within Atu5126 at 133.811 kb on + strand, within Atu5126 at 133.811 kb on + strand, within Atu5126 at 133.819 kb on - strand, within Atu5126 at 133.826 kb on + strand, within Atu5126 at 133.859 kb on + strand, within Atu5126 at 133.879 kb on + strand, within Atu5126 at 133.879 kb on + strand, within Atu5126 at 133.891 kb on + strand, within Atu5126 at 133.909 kb on - strand, within Atu5126 at 133.932 kb on - strand, within Atu5126
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct remove 131,383 + Atu5124 0.35 -1.2 131,389 - Atu5124 0.35 -2.6 131,429 - Atu5124 0.38 -2.0 131,449 - Atu5124 0.40 -0.2 131,506 - Atu5124 0.44 -0.5 131,506 - Atu5124 0.44 -1.3 131,506 - Atu5124 0.44 -0.9 131,549 + Atu5124 0.47 -0.9 131,567 + Atu5124 0.49 +0.8 131,569 + Atu5124 0.49 -2.6 131,577 - Atu5124 0.50 +0.5 131,579 - Atu5124 0.50 -0.0 131,590 + Atu5124 0.50 -0.4 131,590 - Atu5124 0.50 -1.2 131,777 + Atu5124 0.64 -0.2 131,777 + Atu5124 0.64 -0.3 131,777 + Atu5124 0.64 -0.7 131,777 + Atu5124 0.64 -1.7 131,785 - Atu5124 0.65 -0.8 131,785 - Atu5124 0.65 -0.8 131,785 - Atu5124 0.65 -0.9 131,785 - Atu5124 0.65 +0.4 131,785 - Atu5124 0.65 -1.1 131,799 + Atu5124 0.66 -0.9 131,799 + Atu5124 0.66 -2.4 131,799 + Atu5124 0.66 -2.6 131,799 + Atu5124 0.66 +0.0 131,807 - Atu5124 0.67 -1.1 131,807 - Atu5124 0.67 -0.2 131,807 - Atu5124 0.67 -0.2 131,807 - Atu5124 0.67 -0.4 131,881 + Atu5124 0.72 -1.3 131,894 + Atu5124 0.73 -0.9 131,974 - Atu5124 0.79 -1.4 131,984 - Atu5124 0.80 -0.1 131,984 - Atu5124 0.80 -0.8 132,011 - Atu5124 0.82 -0.9 132,121 + -1.1 132,144 - -0.6 132,148 + -2.1 132,525 + Atu5125 0.23 -0.5 132,533 - Atu5125 0.24 -0.5 132,533 - Atu5125 0.24 -2.1 132,541 + Atu5125 0.26 -0.9 132,549 - Atu5125 0.27 -1.2 132,565 + Atu5125 0.29 -1.9 132,786 - Atu5125 0.61 -1.2 132,834 - Atu5125 0.68 -1.6 132,877 - Atu5125 0.74 -1.0 132,892 - Atu5125 0.76 +0.6 132,899 + Atu5125 0.77 -0.9 132,920 + Atu5125 0.80 +1.1 132,966 + Atu5125 0.87 -2.3 133,009 + +3.5 133,036 - +0.1 133,218 - +0.6 133,281 + +1.1 133,281 - -0.8 133,360 + -1.3 133,365 + -2.3 133,373 - Atu5126 0.10 +0.2 133,378 - Atu5126 0.11 +0.3 133,378 - Atu5126 0.11 -0.3 133,386 + Atu5126 0.11 +0.5 133,394 - Atu5126 0.12 +0.6 133,449 - Atu5126 0.17 -1.1 133,539 - Atu5126 0.25 -0.5 133,586 - Atu5126 0.29 -1.0 133,657 + Atu5126 0.36 +0.8 133,675 + Atu5126 0.37 -0.0 133,711 + Atu5126 0.41 +1.0 133,711 + Atu5126 0.41 -0.2 133,782 - Atu5126 0.47 +0.4 133,784 - Atu5126 0.47 -0.4 133,801 + Atu5126 0.49 -0.1 133,801 + Atu5126 0.49 +0.9 133,809 - Atu5126 0.49 +0.1 133,811 + Atu5126 0.50 +1.1 133,811 + Atu5126 0.50 +0.6 133,819 - Atu5126 0.50 +0.3 133,826 + Atu5126 0.51 +0.2 133,859 + Atu5126 0.54 +1.0 133,879 + Atu5126 0.56 -3.0 133,879 + Atu5126 0.56 +0.3 133,891 + Atu5126 0.57 -0.4 133,909 - Atu5126 0.58 -0.9 133,932 - Atu5126 0.60 -0.8
Or see this region's nucleotide sequence